Pavir.Gb01276 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb01276 T289233_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01276.1.p Myb 16 38
Pavir.Gb01276.1.p Myb 44 89

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30147.m013749 Ricinus communis 30147.m013749 N 0.715
Al_scaffold_0002_1204 Arabidopsis lyrata Al_scaffold_0002_1204 N 0.672
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.700
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.770
BGIOSGA002307 Oryza indica BGIOSGA002307 N 0.703
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.699
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.691
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.737
Bo2g011790 Brassica oleracea Bo2g011790 N 0.684
Bo3g017760 Brassica oleracea Bo3g017760 N 0.707
Bo5g131980 Brassica oleracea Bo5g131980 N 0.709
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.770
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.776
Bostr.3125s0001 Boechera stricta Bostr.3125s0001 N 0.679
Bra009910 Brassica rapa Bra009910 N 0.708
Bra031041 Brassica rapa Bra031041 N 0.672
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.714
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.669
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.744
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.770
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.770
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.748
Cagra.1655s0054 Capsella grandiflora Cagra.1655s0054 N 0.687
Cagra.17198s0001 Capsella grandiflora Cagra.17198s0001 N 0.705
Cagra.2519s0060 Capsella grandiflora Cagra.2519s0060 N 0.739
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.749
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.721
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N 0.770
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.742
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.753
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N 0.719
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.732
Eucgr.J00892 Eucalyptus grandis Eucgr.J00892 N 0.675
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.769
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.737
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.722
F775_22650 Aegilops tauschii F775_22650 N 0.742
F775_32151 Aegilops tauschii F775_32151 N 0.687
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.770
GLYMA08G44950 Glycine max GLYMA08G44950 N 0.671
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.731
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.770
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.704
Gorai.008G192900 Gossypium raimondii Gorai.008G192900 I 0.683
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.737
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.763
GRMZM2G032180 Zea mays GRMZM2G032180 N 0.717
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.697
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.758
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.700
LjSGA_032074.1 Lotus japonicus LjSGA_032074.1 N 0.671
LjSGA_148662.1 Lotus japonicus LjSGA_148662.1 N 0.702
MDP0000139931 Malus domestica MDP0000139931 N 0.817
MDP0000153773 Malus domestica MDP0000153773 N 0.689
MDP0000169874 Malus domestica MDP0000169874 N 0.817
MDP0000242612 Malus domestica MDP0000242612 N 0.673
MDP0000475808 Malus domestica MDP0000475808 N 0.744
mgf001247m Mimulus guttatus mgf001247m N 0.728
mgf009707m Mimulus guttatus mgf009707m N 0.754
mgf018110m Mimulus guttatus mgf018110m N 0.720
mgf021749m Mimulus guttatus mgf021749m N 0.720
mgf026463m Mimulus guttatus mgf026463m N 0.671
mgf026560m Mimulus guttatus mgf026560m N 0.688
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.687
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.708
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.750
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.759
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.771
MTR_6g055910 Medicago truncatula MTR_6g055910 I 0.690
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.726
MYB114 Arabidopsis thaliana AT1G66380 I 0.679
MYB21 Arabidopsis thaliana AT3G27810 I 0.768
MYB24 Arabidopsis thaliana AT5G40350 D 0.743
MYB27 Arabidopsis thaliana AT3G53200 D 0.789
MYB59 Arabidopsis thaliana AT5G59780 D 0.770
MYB86 Arabidopsis thaliana AT5G26660 I 0.705
MYB94 Arabidopsis thaliana AT3G47600 D 0.678
OBART12G16130 Oryza barthii OBART12G16130 N 0.758
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.758
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.770
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.719
ORGLA01G0040600 Oryza glaberrima ORGLA01G0040600 N 0.708
OS01G0975300 Oryza sativa OS01G0975300 N 0.759
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.703
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.759
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.703
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.728
Pavir.Ia02093 Panicum virgatum Pavir.Ia02093 N 0.706
Pavir.J19088 Panicum virgatum Pavir.J19088 N 0.723
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.839
Pavir.J24653 Panicum virgatum Pavir.J24653 N 0.692
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.703
PDK_20s1316381g001 Phoenix dactylifera PDK_20s1316381g001 N 0.690
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.710
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.751
PDK_20s1415541g003 Phoenix dactylifera PDK_20s1415541g003 N 0.665
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.701
PDK_20s1933711g001 Phoenix dactylifera PDK_20s1933711g001 N 0.676
PK27824.1 Cannabis sativa PK27824.1 N 0.770
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.744
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.737
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.770
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.687
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.701
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.747
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.770
SapurV1A.0552s0030 Salix purpurea SapurV1A.0552s0030 I 0.678
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.697
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.758
Si003873m.g Setaria italica Si003873m.g N 0.727
TCM_005371 Theobroma cacao TCM_005371 I 0.702
TCM_013983 Theobroma cacao TCM_013983 I 0.678
TCM_021433 Theobroma cacao TCM_021433 I 0.728
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.770
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N 0.830
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N 0.666
Traes_3DL_75F8A05CF Triticum aestivum Traes_3DL_75F8A05CF N 0.691
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.758
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.728
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.758
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.758
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.706
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.726
TT2 Arabidopsis thaliana AT5G35550 I 0.732
VIT_02s0033g00460 Vitis vinifera VIT_02s0033g00460 N 0.666
WER Arabidopsis thaliana AT5G14750 D 0.710