Pavir.Ia02093 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ia02093 T289257_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia02093.1.p Myb 3 26
Pavir.Ia02093.1.p Myb 32 77
Pavir.Ia02093.2.p Myb 3 24
Pavir.Ia02093.2.p Myb 30 75

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OBART12G16130 Oryza barthii OBART12G16130 N 0.849
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.849
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.849
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.849
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.849
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.822
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.822
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.822
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.802
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.791
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.791
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.781
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.781
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.781
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.780
MYB59 Arabidopsis thaliana AT5G59780 D 0.780
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.780
PK27824.1 Cannabis sativa PK27824.1 N 0.776
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.775
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.771
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.771
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.762
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.759
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.757
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N 0.757
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.757
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.757
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.754
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.754
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.753
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.741
MDP0000169874 Malus domestica MDP0000169874 N 0.740
MDP0000139931 Malus domestica MDP0000139931 N 0.740
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.740
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.738
TCM_021433 Theobroma cacao TCM_021433 I 0.737
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.734
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.734
F775_22650 Aegilops tauschii F775_22650 N 0.733
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.732
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.730
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.727
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.726
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.725
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.724
mgf009707m Mimulus guttatus mgf009707m N 0.724
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.723
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.721
MYB27 Arabidopsis thaliana AT3G53200 D 0.720
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.720
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.720
mgf001247m Mimulus guttatus mgf001247m N 0.718
OS01G0975300 Oryza sativa OS01G0975300 N 0.717
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N 0.716
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.714
MYB24 Arabidopsis thaliana AT5G40350 D 0.714
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.714
MYB21 Arabidopsis thaliana AT3G27810 I 0.713
MDP0000475808 Malus domestica MDP0000475808 N 0.713
Si003873m.g Setaria italica Si003873m.g N 0.712
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.711
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.711
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.710
WER Arabidopsis thaliana AT5G14750 D 0.710
MYB86 Arabidopsis thaliana AT5G26660 I 0.710
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.709
GLYMA08G44950 Glycine max GLYMA08G44950 N 0.707
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.707
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N 0.706
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.705
MDP0000470422 Malus domestica MDP0000470422 N 0.704
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.704
MDP0000244980 Malus domestica MDP0000244980 N 0.704
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N 0.704
mgf018110m Mimulus guttatus mgf018110m N 0.701
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.697
mgf026463m Mimulus guttatus mgf026463m N 0.696
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.695
TT2 Arabidopsis thaliana AT5G35550 I 0.691
MDP0000153773 Malus domestica MDP0000153773 N 0.691
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.691
Al_scaffold_0002_1204 Arabidopsis lyrata Al_scaffold_0002_1204 N 0.691
Pavir.J24653 Panicum virgatum Pavir.J24653 N 0.691
MYB114 Arabidopsis thaliana AT1G66380 I 0.690
Bostr.3125s0001 Boechera stricta Bostr.3125s0001 N 0.690
VIT_02s0033g00460 Vitis vinifera VIT_02s0033g00460 N 0.689
TCM_005371 Theobroma cacao TCM_005371 I 0.688
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.686
Traes_5AL_D1807A4E0 Triticum aestivum Traes_5AL_D1807A4E0 N 0.686
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N 0.685
Pm029438 Prunus mume Pm029438 N 0.685
Bra009910 Brassica rapa Bra009910 N 0.684
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.683
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.683
Bra031041 Brassica rapa Bra031041 N 0.682
mgf021749m Mimulus guttatus mgf021749m N 0.682
Cagra.2519s0060 Capsella grandiflora Cagra.2519s0060 N 0.682
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.681
30147.m013749 Ricinus communis 30147.m013749 N 0.680
Bo3g017760 Brassica oleracea Bo3g017760 N 0.680
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.679
PDK_20s1338951g004 Phoenix dactylifera PDK_20s1338951g004 N 0.678
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.678
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.677
PDK_20s1316381g001 Phoenix dactylifera PDK_20s1316381g001 N 0.677
BGIOSGA002307 Oryza indica BGIOSGA002307 N 0.676
orange1.1g038824m.g Citrus sinensis orange1.1g038824m.g N 0.675
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.674
Bo5g131980 Brassica oleracea Bo5g131980 N 0.674
SapurV1A.0552s0030 Salix purpurea SapurV1A.0552s0030 I 0.674
GRMZM2G032180 Zea mays GRMZM2G032180 N 0.674
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.671
MYB94 Arabidopsis thaliana AT3G47600 D 0.671
Cagra.1655s0054 Capsella grandiflora Cagra.1655s0054 N 0.671
Cagra.17198s0001 Capsella grandiflora Cagra.17198s0001 N 0.670
Pavir.J19088 Panicum virgatum Pavir.J19088 N 0.668
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.666
LjSGA_148662.1 Lotus japonicus LjSGA_148662.1 N 0.663
Traes_3DL_75F8A05CF Triticum aestivum Traes_3DL_75F8A05CF N 0.662
Eucgr.J00892 Eucalyptus grandis Eucgr.J00892 N 0.662
PDK_20s1675721g001 Phoenix dactylifera PDK_20s1675721g001 N 0.662
Cla023001 Citrullus lanatus Cla023001 N 0.661