Pavir.Ia04946 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ia04946 T289273_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARR14
M00873_2.00
Arabidopsis thaliana
NNAGATHCKS

SMGDATCTNN
PBM
Franco-Zorrilla et al.(2014)
ARR14
0.813 0.915
ARR14
M02293_2.00
Arabidopsis thaliana
NAGATHYBNN

NNVRDATCTN
PBM
Weirauch et al.(2014)
pTH7531
0.813 0.915
e_gw1.362.4.1
M02341_2.00
Physcomitrella patens
NNNRDATCNN

NNGATHYNNN
PBM
Weirauch et al.(2014)
pTH8461
0.802 0.894
estExt_fgenesh1_pg.C_Chr_16.00010090
M02367_2.00
Ostreococcus tauri
NNNDATCN

NGATHNNN
PBM
Weirauch et al.(2014)
pTH9644
0.742 0.830
ARR1
M02296_2.00
Arabidopsis thaliana
NDGATHYBNN

NNVRDATCHN
PBM
Weirauch et al.(2014)
pTH8257
0.737 0.894
ARR1
M02297_2.00
Arabidopsis thaliana
NAAGATHCKN

NMGDATCTTN
PBM
Weirauch et al.(2014)
pTH8590
0.735 0.894
AT5G05090
M02305_2.00
Arabidopsis thaliana
NHAGATHCKNN

NNMGDATCTDN
PBM
Weirauch et al.(2014)
pTH7104
0.728 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04946.1.p Myb 162 212
Pavir.Ia04946.2.p Myb 151 201

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

461 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AWRI1499_3090 Brettanomyces bruxellensis AWRI1499_3090 I 0.000
CANTEDRAFT_103981 Candida tenuis CANTEDRAFT_103981 I 0.000
GNLVRS01_PISO0F02711g Millerozyma farinosa GNLVRS01_PISO0F02711g I 0.000
GNLVRS01_PISO0J02671g Millerozyma farinosa GNLVRS01_PISO0J02671g I 0.000
SAKL0A02860g Lachancea kluyveri SAKL0A02860g I 0.000
TBLA_0G01800 Tetrapisispora blattae TBLA_0G01800 I 0.000
TPHA_0H01980 Tetrapisispora phaffii TPHA_0H01980 I 0.000
ZBAI_04658 Zygosaccharomyces bailii ZBAI_04658 I 0.000
ZBAI_06699 Zygosaccharomyces bailii ZBAI_06699 I 0.000