TF Information

Pavir.Ib00180 *(Panicum virgatum)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Pavir.Ib00180	T289275_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK26523.1 M01283_2.00	Cannabis sativa	NWHATTCYNN	NNRGAATDWN	PBM Lambert et al.(2019) pTH11304	0.674	0.745
PHR1 M02329_2.00	Oryza sativa	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7755	0.664	0.702
AT2G40260 M07057_2.00	Arabidopsis thaliana	HHWDWAHATTCYHTN	NADRGAATDTWHWDD	Dap-seq OMalley et al.(2016) AT2G40260_col_a	0.706	0.745
AT2G40260 M07058_2.00	Arabidopsis thaliana	NNDDWHHNDDWAHATTCYHT	ADRGAATDTWHHNDDWHHNN	Dap-seq OMalley et al.(2016) AT2G40260_colamp_a	0.706	0.745
AT1G14600 M01268_2.00	Arabidopsis thaliana	NWAYATTCYN	NRGAATRTWN	PBM Lambert et al.(2019) pTH11557	0.695	0.787
PHL6 M02295_2.00	Arabidopsis thaliana	NNWKATNCBN	NVGNATMWNN	PBM Weirauch et al.(2014) pTH7071	0.681	0.681
PHL6 M07083_2.00	Arabidopsis thaliana	NDGAAAACH	DGTTTTCHN	Dap-seq OMalley et al.(2016) At3g13040_col_b	0.681	0.681
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ib00180.1.p	Myb	27	78	RLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQQMY
Pavir.Ib00180.2.p	Myb	27	78	RLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYR
Pavir.Ib00180.3.p	Myb	27	78	RLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYR
Pavir.Ib00180.4.p	Myb	27	78	RLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYR
Pavir.Ib00180.5.p	Myb	27	78	RLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQQMY
Pavir.Ib00180.6.p	Myb	27	78	RLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQQMY

Links
Other Myb/SANT family TFs
Other *Panicum virgatum* TFs

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482 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action