Pavir.J00429 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J00429 T289300_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00429.1.p Myb 1059 1110
Pavir.J00429.2.p Myb 1050 1101
Pavir.J00429.3.p Myb 1035 1086
Pavir.J00429.4.p Myb 1059 1110
Pavir.J00429.5.p Myb 1059 1110
Pavir.J00429.6.p Myb 1050 1101

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_03250 Aegilops tauschii F775_03250 N 0.728
AMTR_s00029p00248140 Amborella trichopoda AMTR_s00029p00248140 N 0.677
AMTR_s00045p00026940 Amborella trichopoda AMTR_s00045p00026940 N 0.685
BRADI2G14372 Brachypodium distachyon BRADI2G14372 N 0.877
BRADI2G41720 Brachypodium distachyon BRADI2G41720 N 0.728
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N 0.671
Cla015187 Citrullus lanatus Cla015187 N 0.677
Cucsa.078210 Cucumis sativus Cucsa.078210 N 0.677
Eucgr.K02162 Eucalyptus grandis Eucgr.K02162 N 0.699
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N 0.677
GLYMA03G18725 Glycine max GLYMA03G18725 N 0.664
GLYMA08G46710 Glycine max GLYMA08G46710 N 0.677
GLYMA16G14060 Glycine max GLYMA16G14060 N 0.664
GLYMA18G36628 Glycine max GLYMA18G36628 N 0.677
Gorai.001G187100 Gossypium raimondii Gorai.001G187100 N 0.677
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N 0.677
MLOC_60761 Hordeum vulgare MLOC_60761 N 0.834
LPERR11G18970 Leersia perrieri LPERR11G18970 N 0.694
Lus10011850.g Linum usitatissimum Lus10011850.g N 0.677
Lus10022788.g Linum usitatissimum Lus10022788.g N 0.677
MDP0000155726 Malus domestica MDP0000155726 N 0.677
MDP0000250529 Malus domestica MDP0000250529 N 0.677
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N 0.677
MTR_7g056603 Medicago truncatula MTR_7g056603 N 0.700
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N 0.718
GSMUA_Achr11G13340_001 Musa acuminata GSMUA_Achr11G13340_001 N 0.739
OBART08G04660 Oryza barthii OBART08G04660 N 0.701
OBART05G28000 Oryza barthii OBART05G28000 N 0.759
OB01G30180 Oryza brachyantha OB01G30180 N 0.701
OB05G35500 Oryza brachyantha OB05G35500 N 0.772
OGLUM08G04910 Oryza glumaepatula OGLUM08G04910 N 0.701
OGLUM05G29460 Oryza glumaepatula OGLUM05G29460 N 0.759
BGIOSGA017449 Oryza indica BGIOSGA017449 N 0.759
BGIOSGA027556 Oryza indica BGIOSGA027556 N 0.701
OLONG_007975 Oryza longistaminata OLONG_007975 N 0.759
OLONG_015531 Oryza longistaminata OLONG_015531 N 0.701
OMERI08G04670 Oryza meridionalis OMERI08G04670 N 0.701
OMERI05G23880 Oryza meridionalis OMERI05G23880 N 0.759
ONIVA08G04510 Oryza nivara ONIVA08G04510 N 0.701
ONIVA05G29890 Oryza nivara ONIVA05G29890 N 0.759
OPUNC05G25580 Oryza punctata OPUNC05G25580 N 0.759
OPUNC05G25600 Oryza punctata OPUNC05G25600 N 0.772
OPUNC08G04510 Oryza punctata OPUNC08G04510 N 0.701
ORUFI08G05170 Oryza rufipogon ORUFI08G05170 N 0.701
ORUFI05G29980 Oryza rufipogon ORUFI05G29980 N 0.759
OS08G0177300 Oryza sativa OS08G0177300 N 0.701
Pavir.J03231 Panicum virgatum Pavir.J03231 N 0.909
PDK_20s1355591g002 Phoenix dactylifera PDK_20s1355591g002 N 0.676
POPTR_0014s19020 Populus trichocarpa POPTR_0014s19020 N 0.663
Pm020347 Prunus mume Pm020347 N 0.679
PRUPE_ppa000065mg Prunus persica PRUPE_ppa000065mg N 0.679
30204.m001750 Ricinus communis 30204.m001750 N 0.664
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N 0.677
Si020947m.g Setaria italica Si020947m.g N 0.841
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N 0.669
TCM_002924 Theobroma cacao TCM_002924 N 0.710
Traes_3AL_06889C77D Triticum aestivum Traes_3AL_06889C77D N 0.735
Traes_1DL_7773A9BFB Triticum aestivum Traes_1DL_7773A9BFB N 0.834
Traes_3DL_FC1A52B36 Triticum aestivum Traes_3DL_FC1A52B36 N 0.735
TRIUR3_17785 Triticum urartu TRIUR3_17785 N 0.834
TRIUR3_27363 Triticum urartu TRIUR3_27363 N 0.728
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N 0.677
GRMZM2G350684 Zea mays GRMZM2G350684 N 0.857
GRMZM2G018048 Zea mays GRMZM2G018048 N 0.857