Pavir.J04129 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J04129 T289326_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN

NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.708 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J04129.1.p Myb 48 95
Pavir.J04129.1.p Myb 101 146

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I 0.909
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I 0.892
Si022826m.g Setaria italica Si022826m.g I 0.892
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.887
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.887
Sb09g001590 Sorghum bicolor Sb09g001590 I 0.880
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.880
ONIVA05G01120 Oryza nivara ONIVA05G01120 I 0.862
OPUNC05G00970 Oryza punctata OPUNC05G00970 I 0.862
OMERI05G01150 Oryza meridionalis OMERI05G01150 I 0.862
OBART05G01080 Oryza barthii OBART05G01080 I 0.862
LPERR05G01030 Leersia perrieri LPERR05G01030 I 0.862
OB05G11070 Oryza brachyantha OB05G11070 I 0.862
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I 0.862
OLONG_004480 Oryza longistaminata OLONG_004480 I 0.862
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I 0.862
BGIOSGA019054 Oryza indica BGIOSGA019054 I 0.862
Si024470m.g Setaria italica Si024470m.g I 0.842
GRMZM2G013581 Zea mays GRMZM2G013581 N 0.836
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I 0.835
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I 0.835
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I 0.835
F775_14172 Aegilops tauschii F775_14172 I 0.835
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.793
OB01G54920 Oryza brachyantha OB01G54920 I 0.789
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.784
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.780
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.779
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.776
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.776
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.776
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.776
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.776
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.776
Si023104m.g Setaria italica Si023104m.g I 0.776
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.776
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.776
OB12G23080 Oryza brachyantha OB12G23080 I 0.776
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.776
MYBAS2 Oryza sativa OS12G0567300 I 0.776
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.776
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.776
F775_06315 Aegilops tauschii F775_06315 I 0.776
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.776
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.772
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.765
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.765
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.765
OBART01G45730 Oryza barthii OBART01G45730 I 0.765
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.765
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.765
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.764
F775_29427 Aegilops tauschii F775_29427 I 0.764
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.764
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.764
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.763
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.759
OB11G27690 Oryza brachyantha OB11G27690 I 0.753
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.752
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.744
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.743
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.742
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I 0.741
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.741
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I 0.739
MDP0000143156 Malus domestica MDP0000143156 I 0.733
MDP0000177010 Malus domestica MDP0000177010 I 0.733
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.731
Cla008413 Citrullus lanatus Cla008413 I 0.731
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.729
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.728
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.719
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.716
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.716
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.716
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I 0.714
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.713
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I 0.713
Pavir.J33560 Panicum virgatum Pavir.J33560 I 0.713
Si026803m.g Setaria italica Si026803m.g I 0.713
Cla013488 Citrullus lanatus Cla013488 I 0.713
MYB59 Arabidopsis thaliana AT5G59780 D 0.708
TRIUR3_16687 Triticum urartu TRIUR3_16687 I 0.708
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.708
BGIOSGA033532 Oryza indica BGIOSGA033532 I 0.708
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I 0.708
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I 0.708
TCM_041904 Theobroma cacao TCM_041904 I 0.708
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I 0.708
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.708
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.708
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.708
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.708
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.708
MLOC_78504 Hordeum vulgare MLOC_78504 I 0.708
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.708
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.708
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I 0.708
Pm000809 Prunus mume Pm000809 I 0.708
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.708
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.708
MYBAS1 Oryza sativa OS11G0700500 I 0.708
F775_28589 Aegilops tauschii F775_28589 I 0.708
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.705
Bra018223 Brassica rapa Bra018223 I 0.705
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.705
Bo3g130340 Brassica oleracea Bo3g130340 I 0.705
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I 0.703
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I 0.701
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.701
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.700
Ca_02593 Cicer arietinum Ca_02593 I 0.698
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.698
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.698
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.696
29788.m000340 Ricinus communis 29788.m000340 I 0.696
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.696
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I 0.694
mgf020363m Mimulus guttatus mgf020363m I 0.693
mgf025691m Mimulus guttatus mgf025691m I 0.693
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.691
MTR_1g062940 Medicago truncatula MTR_1g062940 N 0.685
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.682
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I 0.682
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.681
Bo2g025410 Brassica oleracea Bo2g025410 I 0.678
Bra020289 Brassica rapa Bra020289 I 0.678
Pavir.J11826 Panicum virgatum Pavir.J11826 I 0.676
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I 0.673
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I 0.673
Bo8g082570 Brassica oleracea Bo8g082570 I 0.671
Carubv10019409m.g Capsella rubella Carubv10019409m.g I 0.670
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I 0.670
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I 0.670
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I 0.669
Thhalv10010915m.g Eutrema salsugineum Thhalv10010915m.g I 0.669
TRAES3BF024100110CFD_g Triticum aestivum TRAES3BF024100110CFD_g I 0.669
Bra006694 Brassica rapa Bra006694 I 0.669
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.668
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I 0.667
PGSC0003DMG400027202 Solanum tuberosum PGSC0003DMG400027202 I 0.667
Gorai.004G145800 Gossypium raimondii Gorai.004G145800 I 0.667
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I 0.665
AtMYB27 Vitis vinifera VIT_08s0007g04830 I 0.664
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I 0.663
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I 0.663
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I 0.663
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I 0.663
Bo7g033260 Brassica oleracea Bo7g033260 I 0.662
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I 0.662
GLYMA10G06680 Glycine max GLYMA10G06680 N 0.662
Bra015029 Brassica rapa Bra015029 I 0.662
GLYMA17G17560 Glycine max GLYMA17G17560 I 0.661
GLYMA10G26681 Glycine max GLYMA10G26681 I 0.661