Pavir.J05460 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J05460 T289331_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.672 0.736
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.663 0.758
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J05460.1.p Myb 22 69
Pavir.J05460.1.p Myb 76 119

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Eb01665 Panicum virgatum Pavir.Eb01665 N 0.868
Si003841m.g Setaria italica Si003841m.g I 0.857
Pavir.J35999 Panicum virgatum Pavir.J35999 I 0.818
OMERI01G22060 Oryza meridionalis OMERI01G22060 I 0.763
OGLUM01G27780 Oryza glumaepatula OGLUM01G27780 I 0.763
OBART01G24030 Oryza barthii OBART01G24030 I 0.763
ONIVA01G27030 Oryza nivara ONIVA01G27030 I 0.763
ORGLA01G0193500 Oryza glaberrima ORGLA01G0193500 I 0.763
OS01G0637800 Oryza sativa OS01G0637800 I 0.763
OB01G33330 Oryza brachyantha OB01G33330 I 0.763
OPUNC01G24010 Oryza punctata OPUNC01G24010 I 0.763
ORUFI01G26910 Oryza rufipogon ORUFI01G26910 I 0.763
BGIOSGA004072 Oryza indica BGIOSGA004072 I 0.763
Pavir.Eb01664 Panicum virgatum Pavir.Eb01664 N 0.759
BRADI2G44770 Brachypodium distachyon BRADI2G44770 I 0.748
GRMZM2G143328 Zea mays GRMZM2G143328 I 0.745
TRIUR3_25064 Triticum urartu TRIUR3_25064 I 0.742
MLOC_5568 Hordeum vulgare MLOC_5568 I 0.738
Si003965m.g Setaria italica Si003965m.g I 0.738
Sb03g029050 Sorghum bicolor Sb03g029050 I 0.737
F775_02242 Aegilops tauschii F775_02242 I 0.731
Traes_3DL_429583AEC Triticum aestivum Traes_3DL_429583AEC I 0.731
TRAES3BF026200120CFD_g Triticum aestivum TRAES3BF026200120CFD_g I 0.731
LPERR01G20550 Leersia perrieri LPERR01G20550 I 0.719
Eucgr.J02217 Eucalyptus grandis Eucgr.J02217 I 0.705
SapurV1A.0571s0200 Salix purpurea SapurV1A.0571s0200 I 0.698
POPTR_0001s35200 Populus trichocarpa POPTR_0001s35200 I 0.694
GLYMA07G37142 Glycine max GLYMA07G37142 I 0.682
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.682
MTR_4g121460 Medicago truncatula MTR_4g121460 I 0.682
MTR_2g034790 Medicago truncatula MTR_2g034790 I 0.682
GLYMA17G03480 Glycine max GLYMA17G03480 I 0.682
Eucgr.I01782 Eucalyptus grandis Eucgr.I01782 I 0.679
GLYMA19G14270 Glycine max GLYMA19G14270 I 0.678
GSMUA_Achr9G07000_001 Musa acuminata GSMUA_Achr9G07000_001 I 0.677
Lus10022259.g Linum usitatissimum Lus10022259.g I 0.677
Gorai.006G030800 Gossypium raimondii Gorai.006G030800 I 0.677
Gorai.001G263200 Gossypium raimondii Gorai.001G263200 I 0.677
Pm015692 Prunus mume Pm015692 I 0.677
TCM_016901 Theobroma cacao TCM_016901 I 0.677
GLYMA16G07960 Glycine max GLYMA16G07960 I 0.677
GLYMA19G14230 Glycine max GLYMA19G14230 I 0.677
PRUPE_ppa011751mg Prunus persica PRUPE_ppa011751mg I 0.677
MTR_6g006030 Medicago truncatula MTR_6g006030 I 0.675
orange1.1g045384m.g Citrus sinensis orange1.1g045384m.g I 0.675
Ciclev10016820m.g Citrus clementina Ciclev10016820m.g I 0.675
GLYMA15G15400 Glycine max GLYMA15G15400 I 0.673
MYB24 Arabidopsis thaliana AT5G40350 D 0.672
GLYMA19G00930 Glycine max GLYMA19G00930 I 0.670
PGSC0003DMG400000485 Solanum tuberosum PGSC0003DMG400000485 I 0.670
GLYMA05G08690 Glycine max GLYMA05G08690 I 0.670
gene28435-v1.0-hybrid Fragaria vesca gene28435-v1.0-hybrid I 0.668
MDP0000344978 Malus domestica MDP0000344978 I 0.668
MTR_7g035075 Medicago truncatula MTR_7g035075 I 0.668
evm.TU.supercontig_186.7 Carica papaya evm.TU.supercontig_186.7 I 0.668
Bo5g043390 Brassica oleracea Bo5g043390 I 0.667
MTR_1g086510 Medicago truncatula MTR_1g086510 I 0.667
Ca_03536 Cicer arietinum Ca_03536 I 0.667
VIT_14s0066g01090 Vitis vinifera VIT_14s0066g01090 I 0.666
Sb03g012550 Sorghum bicolor Sb03g012550 I 0.664
cassava40469.m1 Manihot esculenta cassava40469.m1 I 0.664
Si002107m.g Setaria italica Si002107m.g I 0.664
MYB05_ANTMA Antirrhinum majus MYB05_ANTMA D 0.663
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.663
Aquca_002_00135 Aquilegia coerulea Aquca_002_00135 I 0.662
GSMUA_Achr1G27270_001 Musa acuminata GSMUA_Achr1G27270_001 I 0.662