Pavir.J10177 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J10177 T289355_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J10177.1.p Myb 266 316
Pavir.J10177.2.p Myb 195 245

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Db00757 Panicum virgatum Pavir.Db00757 N 0.909
Si007844m.g Setaria italica Si007844m.g I 0.898
Sb10g024180 Sorghum bicolor Sb10g024180 N 0.811
Si008512m.g Setaria italica Si008512m.g N 0.802
GRMZM2G401835 Zea mays GRMZM2G401835 I 0.766
Sb05g004150 Sorghum bicolor Sb05g004150 I 0.751
Pavir.Ia00770 Panicum virgatum Pavir.Ia00770 N 0.747
GRMZM2G360523 Zea mays GRMZM2G360523 I 0.733
OGLUM06G05540 Oryza glumaepatula OGLUM06G05540 I 0.725
OMERI06G06380 Oryza meridionalis OMERI06G06380 I 0.725
OBART06G05360 Oryza barthii OBART06G05360 I 0.725
OB06G14930 Oryza brachyantha OB06G14930 I 0.725
ONIVA06G06160 Oryza nivara ONIVA06G06160 I 0.725
Traes_7DS_327FBC2CA Triticum aestivum Traes_7DS_327FBC2CA I 0.725
OB02G42700 Oryza brachyantha OB02G42700 I 0.725
Pavir.Da02067 Panicum virgatum Pavir.Da02067 I 0.725
ORGLA06G0048800 Oryza glaberrima ORGLA06G0048800 I 0.725
Sb10g005580 Sorghum bicolor Sb10g005580 I 0.725
Sb04g035980 Sorghum bicolor Sb04g035980 I 0.725
Si006013m.g Setaria italica Si006013m.g I 0.725
Si016546m.g Setaria italica Si016546m.g I 0.725
TCM_036926 Theobroma cacao TCM_036926 I 0.725
RR22 Oryza sativa OS06G0183100 I 0.725
RR23 Oryza sativa OS02G0796500 I 0.725
ORGLA02G0311700 Oryza glaberrima ORGLA02G0311700 I 0.725
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.725
Traes_7AS_DECB8080D Triticum aestivum Traes_7AS_DECB8080D I 0.725
ORUFI06G05490 Oryza rufipogon ORUFI06G05490 I 0.725
OPUNC06G05150 Oryza punctata OPUNC06G05150 I 0.725
Traes_7DS_22DE624A5 Triticum aestivum Traes_7DS_22DE624A5 I 0.725
RR22 Oryza indica BGIOSGA022430 I 0.725
GRMZM2G409974 Zea mays GRMZM2G409974 I 0.725
F775_19079 Aegilops tauschii F775_19079 I 0.725
Pavir.J08270 Panicum virgatum Pavir.J08270 I 0.725
chr5.CM0345.260.nd Lotus japonicus chr5.CM0345.260.nd I 0.725
GRMZM2G479110 Zea mays GRMZM2G479110 I 0.725
F775_14758 Aegilops tauschii F775_14758 I 0.725
LPERR06G04900 Leersia perrieri LPERR06G04900 I 0.725
MLOC_11341 Hordeum vulgare MLOC_11341 I 0.725
RR23 Oryza indica BGIOSGA005436 I 0.725
Pavir.J35630 Panicum virgatum Pavir.J35630 I 0.725
TRIUR3_26858 Triticum urartu TRIUR3_26858 I 0.725
TRIUR3_28229 Triticum urartu TRIUR3_28229 I 0.725
Gorai.010G243900 Gossypium raimondii Gorai.010G243900 I 0.718
PRUPE_ppa024819mg Prunus persica PRUPE_ppa024819mg I 0.717
Ciclev10007639m.g Citrus clementina Ciclev10007639m.g I 0.717
Cucsa.271670 Cucumis sativus Cucsa.271670 I 0.717
cassava8114.valid.m1 Manihot esculenta cassava8114.valid.m1 I 0.717
Pm005710 Prunus mume Pm005710 I 0.717
cassava262.valid.m1 Manihot esculenta cassava262.valid.m1 I 0.717
PDK_20s1782651g001 Phoenix dactylifera PDK_20s1782651g001 I 0.717
Cla021325 Citrullus lanatus Cla021325 I 0.717
TCM_037098 Theobroma cacao TCM_037098 I 0.717
PDK_20s1342911g003 Phoenix dactylifera PDK_20s1342911g003 I 0.717
VIT_04s0008g05900 Vitis vinifera VIT_04s0008g05900 I 0.717
29848.m004559 Ricinus communis 29848.m004559 I 0.717
GLYMA15G24770 Glycine max GLYMA15G24770 I 0.717
cassava18405.valid.m1 Manihot esculenta cassava18405.valid.m1 I 0.717
cassava18404.valid.m1 Manihot esculenta cassava18404.valid.m1 I 0.717
SapurV1A.0730s0060 Salix purpurea SapurV1A.0730s0060 I 0.717
Aquca_016_00168 Aquilegia coerulea Aquca_016_00168 I 0.717
orange1.1g005465m.g Citrus sinensis orange1.1g005465m.g I 0.717
29737.m001227 Ricinus communis 29737.m001227 I 0.717
GLYMA14G13320 Glycine max GLYMA14G13320 I 0.717
GLYMA04G06650 Glycine max GLYMA04G06650 I 0.717
GLYMA09G14650 Glycine max GLYMA09G14650 I 0.717
GLYMA06G06730 Glycine max GLYMA06G06730 I 0.717
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I 0.710
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I 0.710
PGSC0003DMG400040318 Solanum tuberosum PGSC0003DMG400040318 N 0.705
Gorai.009G061000 Gossypium raimondii Gorai.009G061000 I 0.703
mgf001591m Mimulus guttatus mgf001591m I 0.702
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.702
mgf014863m Mimulus guttatus mgf014863m I 0.702
Gorai.004G291100 Gossypium raimondii Gorai.004G291100 I 0.702
Eucgr.C00380 Eucalyptus grandis Eucgr.C00380 I 0.702
evm.TU.supercontig_46.117 Carica papaya evm.TU.supercontig_46.117 I 0.702
Solyc07g005140.2 Solanum lycopersicum Solyc07g005140.2 I 0.702
Gorai.009G054200 Gossypium raimondii Gorai.009G054200 I 0.702
PGSC0003DMG400003196 Solanum tuberosum PGSC0003DMG400003196 I 0.702
chr6.CM0037.920.nc Lotus japonicus chr6.CM0037.920.nc I 0.699
PDK_20s1362511g001 Phoenix dactylifera PDK_20s1362511g001 I 0.699
Bra020390 Brassica rapa Bra020390 I 0.699
Bo2g028820 Brassica oleracea Bo2g028820 I 0.699
Bostr.26833s0442 Boechera stricta Bostr.26833s0442 I 0.699
Cagra.0891s0003 Capsella grandiflora Cagra.0891s0003 I 0.699
Carubv10026052m.g Capsella rubella Carubv10026052m.g I 0.699
Thhalv10015296m.g Eutrema salsugineum Thhalv10015296m.g I 0.699
Traes_7AS_503B57D77 Triticum aestivum Traes_7AS_503B57D77 I 0.698
gene10041-v1.0-hybrid Fragaria vesca gene10041-v1.0-hybrid I 0.695
SELMODRAFT_447635 Selaginella moellendorffii SELMODRAFT_447635 I 0.695
Eucgr.C04050 Eucalyptus grandis Eucgr.C04050 I 0.692
Pavir.Aa03151 Panicum virgatum Pavir.Aa03151 I 0.692
Pavir.Ab00568 Panicum virgatum Pavir.Ab00568 I 0.692
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I 0.692
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I 0.692
Si016630m.g Setaria italica Si016630m.g I 0.692
GRMZM2G060485 Zea mays GRMZM2G060485 I 0.692
Traes_6AS_A42E71A00 Triticum aestivum Traes_6AS_A42E71A00 I 0.692
MTR_3g106220 Medicago truncatula MTR_3g106220 I 0.692
Sb04g005580 Sorghum bicolor Sb04g005580 I 0.692
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I 0.692
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I 0.692
F775_13501 Aegilops tauschii F775_13501 I 0.692
MLOC_3955 Hordeum vulgare MLOC_3955 I 0.692
Traes_6BS_B50BEBC7E Triticum aestivum Traes_6BS_B50BEBC7E I 0.692
TRIUR3_31924 Triticum urartu TRIUR3_31924 I 0.692
BRADI3G06120 Brachypodium distachyon BRADI3G06120 I 0.692
Traes_6DS_EF4A57213 Triticum aestivum Traes_6DS_EF4A57213 I 0.692
CM1729.100.nc Lotus japonicus CM1729.100.nc I 0.688
MTR_1g013170 Medicago truncatula MTR_1g013170 I 0.686
PRUPE_ppa018934mg Prunus persica PRUPE_ppa018934mg I 0.684
PGSC0003DMG400007823 Solanum tuberosum PGSC0003DMG400007823 I 0.684
Solyc12g010330.1 Solanum lycopersicum Solyc12g010330.1 I 0.684
Pm027701 Prunus mume Pm027701 I 0.684
OGLUM02G06200 Oryza glumaepatula OGLUM02G06200 I 0.677
OLONG_007266 Oryza longistaminata OLONG_007266 I 0.677
OMERI02G07120 Oryza meridionalis OMERI02G07120 I 0.677
OB02G15530 Oryza brachyantha OB02G15530 I 0.677
LPERR02G05460 Leersia perrieri LPERR02G05460 I 0.677
RR24 Oryza indica BGIOSGA007015 I 0.677
OBART02G06200 Oryza barthii OBART02G06200 I 0.677
ONIVA02G07230 Oryza nivara ONIVA02G07230 I 0.677
ORGLA02G0057500 Oryza glaberrima ORGLA02G0057500 I 0.677
ORUFI02G06340 Oryza rufipogon ORUFI02G06340 I 0.677
RR24 Oryza sativa OS02G0182100 I 0.677
Pavir.Db00644 Panicum virgatum Pavir.Db00644 I 0.676
Traes_7BS_17C8D2707 Triticum aestivum Traes_7BS_17C8D2707 I 0.672
Traes_7AS_1318B59D3 Triticum aestivum Traes_7AS_1318B59D3 I 0.672
OLONG_005451 Oryza longistaminata OLONG_005451 I 0.672
GSMUA_AchrUn_randomG18820_001 Musa acuminata GSMUA_AchrUn_randomG18820_001 I 0.672
mgf018559m Mimulus guttatus mgf018559m I 0.670
Sb08g006300 Sorghum bicolor Sb08g006300 N 0.668
BRADI3G54120 Brachypodium distachyon BRADI3G54120 I 0.665
MLOC_76165 Hordeum vulgare MLOC_76165 I 0.665
Traes_6DL_D1C9CE275 Triticum aestivum Traes_6DL_D1C9CE275 I 0.665
Traes_6BL_790C095EE Triticum aestivum Traes_6BL_790C095EE I 0.665
BRADI1G47400 Brachypodium distachyon BRADI1G47400 I 0.665
evm.TU.supercontig_127.10 Carica papaya evm.TU.supercontig_127.10 I 0.664
GSMUA_Achr3G13400_001 Musa acuminata GSMUA_Achr3G13400_001 I 0.664
GSMUA_Achr11G08310_001 Musa acuminata GSMUA_Achr11G08310_001 I 0.664
GLK2 Arabidopsis thaliana AT5G44190 I 0.661
Carubv10026528m.g Capsella rubella Carubv10026528m.g I 0.661
Lus10036303.g Linum usitatissimum Lus10036303.g I 0.661
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I 0.661
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I 0.661
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I 0.661
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I 0.661