Pavir.J13677 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J13677 T289374_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.784 0.859
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH

DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.721 0.796
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN

NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.698 0.753
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.671 0.728
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW

WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.671 0.728
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH

DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.671 0.728
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J13677.1.p Myb 91 137
Pavir.J13677.1.p Myb 143 188
Pavir.J13677.2.p Myb 91 137
Pavir.J13677.2.p Myb 143 187

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.909
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.909
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.900
Si001686m.g Setaria italica Si001686m.g I 0.867
Pm018862 Prunus mume Pm018862 I 0.836
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.836
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.825
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.825
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.822
TCM_042629 Theobroma cacao TCM_042629 I 0.822
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.820
MDP0000284922 Malus domestica MDP0000284922 I 0.816
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.816
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.815
mgf015566m Mimulus guttatus mgf015566m I 0.812
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.811
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.811
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.810
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.809
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.809
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.806
27798.m000612 Ricinus communis 27798.m000612 I 0.803
Cla018417 Citrullus lanatus Cla018417 I 0.803
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.803
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.801
PK07741.1 Cannabis sativa PK07741.1 D 0.801
MDP0000807341 Malus domestica MDP0000807341 I 0.800
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.798
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.798
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.796
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.793
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.792
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.789
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.789
OB01G46120 Oryza brachyantha OB01G46120 I 0.783
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.782
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.781
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.779
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.779
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.774
MDP0000203733 Malus domestica MDP0000203733 I 0.773
MDP0000319124 Malus domestica MDP0000319124 I 0.773
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.773
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.772
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.772
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.768
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.768
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.766
PK12959.1 Cannabis sativa PK12959.1 I 0.764
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.763
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.763
MYB109 Arabidopsis thaliana AT3G55730 I 0.763
TCM_021796 Theobroma cacao TCM_021796 I 0.761
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.757
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.757
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.756
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.756
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.755
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.753
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.753
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.753
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.753
OS01G0850400 Oryza sativa OS01G0850400 I 0.753
OBART01G37390 Oryza barthii OBART01G37390 I 0.753
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.753
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.753
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.753
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.750
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.749
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.747
Bra005006 Brassica rapa Bra005006 I 0.747
BRADI2G55040 Brachypodium distachyon BRADI2G55040 I 0.747
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.745
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.743
Bo4g025810 Brassica oleracea Bo4g025810 I 0.742
MDP0000478512 Malus domestica MDP0000478512 I 0.740
Pm002576 Prunus mume Pm002576 I 0.740
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.738
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.737
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.736
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.734
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.734
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.733
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.733
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.731
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.731
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.729
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.729
Bo3g062160 Brassica oleracea Bo3g062160 I 0.729
mgf018580m Mimulus guttatus mgf018580m I 0.726
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.724
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.724
Bra007186 Brassica rapa Bra007186 I 0.723
MYB1 Arabidopsis thaliana AT3G09230 D 0.721
29801.m003096 Ricinus communis 29801.m003096 I 0.720
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.720
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.719
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.718
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.717
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.717
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.714
Bo8g090160 Brassica oleracea Bo8g090160 I 0.714
PK16550.1 Cannabis sativa PK16550.1 I 0.713
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.710
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.706
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.705
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.698
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.698
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.698
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.698
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.698
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.698
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.698
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.698
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.698
Si017917m.g Setaria italica Si017917m.g I 0.698
OS02G0187700 Oryza sativa OS02G0187700 D 0.698
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.698
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.698
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.698
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.698
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.698
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.698
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.694
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.693
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.693
Pm021211 Prunus mume Pm021211 I 0.693
Si032789m.g Setaria italica Si032789m.g I 0.693
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.693
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.693
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.693
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.693
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.692
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.692
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.691
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.689
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.689
OS09G0106700 Oryza sativa OS09G0106700 I 0.689
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.689
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.689
OBART09G00310 Oryza barthii OBART09G00310 I 0.689
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.689
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.689
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.689
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.689
OB09G10200 Oryza brachyantha OB09G10200 I 0.689
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.689
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.689
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.689
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.689
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.689
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.688
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.687
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.686
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.685
Bra001323 Brassica rapa Bra001323 I 0.685
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.683
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.683
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.683
MYB25 Arabidopsis thaliana AT2G39880 I 0.682
Traes_7DL_1FA87027B Triticum aestivum Traes_7DL_1FA87027B I 0.681
TRIUR3_25447 Triticum urartu TRIUR3_25447 I 0.681
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.681
MLOC_63964 Hordeum vulgare MLOC_63964 I 0.681
MLOC_64963 Hordeum vulgare MLOC_64963 I 0.681
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.678
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.677
BGIOSGA020819 Oryza indica BGIOSGA020819 I 0.677
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.677
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.677
OGLUM06G23260 Oryza glumaepatula OGLUM06G23260 I 0.677
Si006938m.g Setaria italica Si006938m.g I 0.677
OPUNC06G19910 Oryza punctata OPUNC06G19910 I 0.677
LPERR06G18380 Leersia perrieri LPERR06G18380 I 0.677
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.677
ORUFI06G23790 Oryza rufipogon ORUFI06G23790 I 0.677
ORGLA06G0184100 Oryza glaberrima ORGLA06G0184100 I 0.677
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.677
ONIVA06G26080 Oryza nivara ONIVA06G26080 I 0.677
Cla013306 Citrullus lanatus Cla013306 I 0.677
OS06G0637500 Oryza sativa OS06G0637500 I 0.677
29814.m000736 Ricinus communis 29814.m000736 I 0.677
OMERI06G22090 Oryza meridionalis OMERI06G22090 I 0.677
TRIUR3_08319 Triticum urartu TRIUR3_08319 I 0.674
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.674
MDP0000187872 Malus domestica MDP0000187872 I 0.672
Bra012149 Brassica rapa Bra012149 I 0.671
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.671
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.671
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.671
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.671
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.671
Bo7g063830 Brassica oleracea Bo7g063830 I 0.671
MYB44 Arabidopsis thaliana AT5G67300 D 0.671
POPTR_0001s30750 Populus trichocarpa POPTR_0001s30750 I 0.671
Bo2g167960 Brassica oleracea Bo2g167960 I 0.671
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.671
mgf025567m Mimulus guttatus mgf025567m I 0.671
Lus10014103.g Linum usitatissimum Lus10014103.g I 0.670
Cla004431 Citrullus lanatus Cla004431 I 0.670
estExt_fgenesh4_pg.C_10375 Volvox carteri estExt_fgenesh4_pg.C_10375 I 0.669
mgf020432m Mimulus guttatus mgf020432m I 0.669
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.669
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.669
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.669
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.668
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.668
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.668
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.667
Ca_12468 Cicer arietinum Ca_12468 I 0.666
Bra034057 Brassica rapa Bra034057 I 0.666
MDP0000298689 Malus domestica MDP0000298689 I 0.664
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.664
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.663
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.663
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.662
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.661
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.661
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.661