CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J13677
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J13677
T289374_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.784
0.859
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.704
0.793
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN
NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.698
0.761
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.671
0.720
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.671
0.720
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.671
0.728
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J13677.1.p
Myb
91
137
RGPWSPEEDAVLSDLVEKLGARNWTLIARGIPGRSGKSCRLRWCNQL
Pavir.J13677.1.p
Myb
143
188
RKPFTEEEDRIIMAAHAVHGNKWACIAKLLDGRTDNAIKNHWNSTL
Pavir.J13677.2.p
Myb
91
137
RGPWSPEEDAVLSDLVEKLGARNWTLIARGIPGRSGKSCRLRWCNQL
Pavir.J13677.2.p
Myb
143
187
RKPFTEEDRIIMAAHAVHGNKWACIAKLLDGRTDNAIKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
220 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy