TF Information

Pavir.J14418 *(Panicum virgatum)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Pavir.J14418	T289378_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB52 M00871_2.00	Arabidopsis thaliana	NNNAMCNDNN	NNHNGKTNNN	PBM Franco-Zorrilla et al.(2014) MYB52	0.782	0.860
MYB52 M07007_2.00	Arabidopsis thaliana	TAACGGTNHHD	HDDNACCGTTA	Dap-seq OMalley et al.(2016) MYB52_col_a	0.782	0.860
MYB105 M07031_2.00	Arabidopsis thaliana	TAACGGTWWHDDW	WHHDWWACCGTTA	Dap-seq OMalley et al.(2016) MYB105_col_a	0.741	0.817
MYB105 M07032_2.00	Arabidopsis thaliana	NNDWHDHTAACGGWWWH	DWWWCCGTTADHDWHNN	Dap-seq OMalley et al.(2016) MYB105_colamp_a	0.741	0.817
MYB56 M07130_2.00	Arabidopsis thaliana	DDHNHTAACKGWHWH	DWDWCMGTTADNDHH	Dap-seq OMalley et al.(2016) MYB56_col_a	0.701	0.763
MYB56 M07131_2.00	Arabidopsis thaliana	DNNHTAACGGWHWHD	HDWDWCCGTTADNNH	Dap-seq OMalley et al.(2016) MYB56_colamp_a	0.701	0.763
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.J14418.1.p	Myb	4	50	RGHWRPSEDEKLKELVALYGPHNWNAIAEKLQGRSGKSCRLRWFNQL
Pavir.J14418.1.p	Myb	56	101	RSPFSEEEEELLLASHRVHGNRWAVIARLFPGRTDNAVKNHWHVIM
Pavir.J14418.2.p	Myb	4	50	RGHWRPSEDEKLKELVALYGPHNWNAIAEKLQGRSGKSCRLRWFNQL
Pavir.J14418.2.p	Myb	56	101	RSPFSEEEEELLLASHRVHGNRWAVIARLFPGRTDNAVKNHWHVIM
Pavir.J14418.3.p	Myb	4	50	RGHWRPSEDEKLKELVALYGPHNWNAIAEKLQGRSGKSCRLRWFNQL
Pavir.J14418.3.p	Myb	56	101	RSPFSEEEEELLLASHRVHGNRWAVIARLFPGRTDNAVKNHWHVIM

Links
Other Myb/SANT family TFs
Other *Panicum virgatum* TFs

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375 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action