CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J22834
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J22834
T289412_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J22834.1.p
Myb
14
61
KGAWTKEEDQRLVAYIKAHGKCSWRSLPKAAGLLRCGKSCRLRWINYL
Pavir.J22834.1.p
Myb
67
94
RGNFTEEEDELIIKLHGLLGNNVAAAAS
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TRIUR3_28515
Triticum urartu
TRIUR3_28515
N
0.757
F775_04823
Aegilops tauschii
F775_04823
I
0.750
GRMZM2G000818
Zea mays
GRMZM2G000818
I
0.739
GRMZM2G124715
Zea mays
GRMZM2G124715
I
0.729
mgf021550m
Mimulus guttatus
mgf021550m
N
0.728
GRMZM2G077789
Zea mays
GRMZM2G077789
I
0.728
evm.TU.supercontig_18.16
Carica papaya
evm.TU.supercontig_18.16
I
0.721
PRUPE_ppa021145mg
Prunus persica
PRUPE_ppa021145mg
N
0.720
MLOC_69570
Hordeum vulgare
MLOC_69570
I
0.719
TRIUR3_23036
Triticum urartu
TRIUR3_23036
N
0.715
30225.m001697
Ricinus communis
30225.m001697
N
0.704
PGSC0003DMG400006176
Solanum tuberosum
PGSC0003DMG400006176
I
0.704
OB05G25260
Oryza brachyantha
OB05G25260
N
0.696
29889.m003258
Ricinus communis
29889.m003258
I
0.689
MDP0000582174
Malus domestica
MDP0000582174
N
0.686
ORGLA12G0042500
Oryza glaberrima
ORGLA12G0042500
N
0.675
29816.m000664
Ricinus communis
29816.m000664
N
0.666
SELMODRAFT_39454
Selaginella moellendorffii
SELMODRAFT_39454
I
0.661
SELMODRAFT_39481
Selaginella moellendorffii
SELMODRAFT_39481
I
0.661