Pavir.J25000 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J25000 T289424_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN

NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.746 0.806
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD

HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.746 0.806
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25000.1.p Myb 84 130
Pavir.J25000.1.p Myb 136 181

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action