Pavir.J25377 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J25377 T289427_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25377.1.p Myb 1 24

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N 0.866
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N 0.843
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N 0.843
Cagra.0876s0043 Capsella grandiflora Cagra.0876s0043 N 0.840
cassava15703.m1 Manihot esculenta cassava15703.m1 N 0.837
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N 0.832
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N 0.830
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N 0.828
LjSGA_057664.1 Lotus japonicus LjSGA_057664.1 N 0.826
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N 0.820
mgf018056m Mimulus guttatus mgf018056m N 0.818
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N 0.815
CM0385.220.nd Lotus japonicus CM0385.220.nd N 0.815
cassava45648.m1 Manihot esculenta cassava45648.m1 N 0.815
Pavir.J14839 Panicum virgatum Pavir.J14839 N 0.815
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N 0.811
MLOC_39554 Hordeum vulgare MLOC_39554 I 0.809
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N 0.806
OB06G28240 Oryza brachyantha OB06G28240 N 0.802
TCM_041010 Theobroma cacao TCM_041010 I 0.802
Eucgr.B03766 Eucalyptus grandis Eucgr.B03766 N 0.802
mgf023771m Mimulus guttatus mgf023771m N 0.797
MTR_1g087540 Medicago truncatula MTR_1g087540 N 0.797
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N 0.795
Traes_7AS_ADDEF000C Triticum aestivum Traes_7AS_ADDEF000C N 0.789
Pm000007 Prunus mume Pm000007 N 0.789
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.789
ORGLA02G0219000 Oryza glaberrima ORGLA02G0219000 N 0.788
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I 0.785
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N 0.776
Ca_10215 Cicer arietinum Ca_10215 N 0.772
F775_42755 Aegilops tauschii F775_42755 N 0.771
PK21717.1 Cannabis sativa PK21717.1 N 0.762
Gorai.008G086400 Gossypium raimondii Gorai.008G086400 I 0.762
chr5.CM0071.390.nd Lotus japonicus chr5.CM0071.390.nd N 0.756
MLOC_12474 Hordeum vulgare MLOC_12474 N 0.745
OS05G0350900 Oryza sativa OS05G0350900 N 0.737
mgf020736m Mimulus guttatus mgf020736m N 0.734
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N 0.734
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.733
ATMYB16 Arabidopsis thaliana AT5G15310 I 0.733
MYB3 Arabidopsis thaliana AT1G22640 D 0.732
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.727
MDP0000911051 Malus domestica MDP0000911051 N 0.727
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.720
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N 0.716
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N 0.716
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.716
cassava2662.m1 Manihot esculenta cassava2662.m1 N 0.716
MLOC_71332 Hordeum vulgare MLOC_71332 N 0.716
evm.TU.supercontig_1.55 Carica papaya evm.TU.supercontig_1.55 N 0.712
Bo8g104180 Brassica oleracea Bo8g104180 N 0.711
Bo4g198650 Brassica oleracea Bo4g198650 N 0.711
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N 0.708
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I 0.707
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N 0.701
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.701
Traes_5AS_D238844BB Triticum aestivum Traes_5AS_D238844BB N 0.696
AMTR_s00057p00069720 Amborella trichopoda AMTR_s00057p00069720 N 0.693
PK00358.1 Cannabis sativa PK00358.1 N 0.693
MDP0000879675 Malus domestica MDP0000879675 N 0.689
mgf017705m Mimulus guttatus mgf017705m N 0.687
OS04G0517100 Oryza sativa OS04G0517100 N 0.686
GLYMA16G16170 Glycine max GLYMA16G16170 N 0.682
30128.m008990 Ricinus communis 30128.m008990 N 0.682
Solyc03g098270.1 Solanum lycopersicum Solyc03g098270.1 N 0.680
Bra024685 Brassica rapa Bra024685 N 0.680
BGIOSGA010548 Oryza indica BGIOSGA010548 N 0.679
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N 0.677
MDP0000413041 Malus domestica MDP0000413041 N 0.675
mg021480m Mimulus guttatus mg021480m N 0.666
GLYMA0041S00310 Glycine max GLYMA0041S00310 I 0.665
Ciclev10023519m.g Citrus clementina Ciclev10023519m.g N 0.664