Pavir.J28142 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J28142 T289438_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB80
M07142_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MS188_col_a 		0.698 0.844
MYB80
M07143_2.00 		Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR		 Dap-seq
OMalley et al.(2016)
MS188_colamp_a 		0.698 0.844
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J28142.1.p Myb 1 32
Pavir.J28142.1.p Myb 38 83

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB04G23000 Oryza brachyantha OB04G23000 I 0.791
Si012130m.g Setaria italica Si012130m.g I 0.791
GRMZM2G173633 Zea mays GRMZM2G173633 I 0.791
Traes_2BL_361925B62 Triticum aestivum Traes_2BL_361925B62 I 0.791
OGLUM04G15520 Oryza glumaepatula OGLUM04G15520 I 0.791
OMERI04G13500 Oryza meridionalis OMERI04G13500 I 0.791
ORUFI04G17000 Oryza rufipogon ORUFI04G17000 I 0.791
ORGLA04G0126700 Oryza glaberrima ORGLA04G0126700 I 0.791
OPUNC04G13560 Oryza punctata OPUNC04G13560 I 0.791
ONIVA04G13800 Oryza nivara ONIVA04G13800 I 0.791
Sb06g019650 Sorghum bicolor Sb06g019650 I 0.791
TRIUR3_35325 Triticum urartu TRIUR3_35325 I 0.791
BGIOSGA014912 Oryza indica BGIOSGA014912 I 0.791
Pavir.Ga01401 Panicum virgatum Pavir.Ga01401 I 0.791
BRADI5G13041 Brachypodium distachyon BRADI5G13041 I 0.791
F775_22620 Aegilops tauschii F775_22620 I 0.791
LPERR04G12420 Leersia perrieri LPERR04G12420 I 0.782
Gorai.009G454000 Gossypium raimondii Gorai.009G454000 I 0.772
Cucsa.041880 Cucumis sativus Cucsa.041880 I 0.772
Cla004524 Citrullus lanatus Cla004524 I 0.772
Ca_17657 Cicer arietinum Ca_17657 I 0.772
AtMYB103 Vitis vinifera VIT_19s0015g01280 I 0.772
cassava33918.m1 Manihot esculenta cassava33918.m1 I 0.772
PRUPE_ppa021719mg Prunus persica PRUPE_ppa021719mg I 0.772
MTR_3g461490 Medicago truncatula MTR_3g461490 I 0.772
GLYMA18G07960 Glycine max GLYMA18G07960 I 0.772
BGIOSGA030830 Oryza indica BGIOSGA030830 I 0.771
Aquca_005_00315 Aquilegia coerulea Aquca_005_00315 I 0.770
Eucgr.F03656 Eucalyptus grandis Eucgr.F03656 I 0.769
gene01457-v1.0-hybrid Fragaria vesca gene01457-v1.0-hybrid I 0.765
POPTR_0011s17060 Populus trichocarpa POPTR_0011s17060 I 0.763
Ciclev10008921m.g Citrus clementina Ciclev10008921m.g I 0.761
TCM_030529 Theobroma cacao TCM_030529 I 0.755
POPTR_0001s47430 Populus trichocarpa POPTR_0001s47430 I 0.752
evm.TU.supercontig_12.83 Carica papaya evm.TU.supercontig_12.83 I 0.748
Traes_2DL_A03AB7608 Triticum aestivum Traes_2DL_A03AB7608 I 0.746
PGSC0003DMG400008687 Solanum tuberosum PGSC0003DMG400008687 I 0.746
Solyc10g005760.1 Solanum lycopersicum Solyc10g005760.1 I 0.746
SapurV1A.0395s0050 Salix purpurea SapurV1A.0395s0050 I 0.735
SapurV1A.0338s0180 Salix purpurea SapurV1A.0338s0180 I 0.731
GLYMA08G44950 Glycine max GLYMA08G44950 N 0.730
Bra035604 Brassica rapa Bra035604 I 0.715
mgf026463m Mimulus guttatus mgf026463m N 0.710
Bostr.26833s0652 Boechera stricta Bostr.26833s0652 I 0.707
MYB80 Arabidopsis thaliana AT5G56110 D 0.698
Bo9g123440 Brassica oleracea Bo9g123440 I 0.698
Al_scaffold_0008_2049 Arabidopsis lyrata Al_scaffold_0008_2049 I 0.698
Thhalv10015622m.g Eutrema salsugineum Thhalv10015622m.g I 0.698
Bra002847 Brassica rapa Bra002847 I 0.698
Cagra.3745s0008 Capsella grandiflora Cagra.3745s0008 I 0.698
Carubv10027619m.g Capsella rubella Carubv10027619m.g I 0.698
Bo2g036530 Brassica oleracea Bo2g036530 I 0.696
AtMYB103 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001268 I 0.694