Pavir.J28634 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J28634 T289442_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN

NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.693 0.947
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN

NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.684 0.895
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT

AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.684 0.895
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.684 0.895
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
0.684 0.895
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT

AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
0.684 0.895
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD

HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.683 0.921
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.683 0.921
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT

AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.683 0.921
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J28634.1.p Myb 60 97

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LPERR06G00360 Leersia perrieri LPERR06G00360 N 0.854
PGSC0003DMG400011048 Solanum tuberosum PGSC0003DMG400011048 I 0.819
GRMZM2G057408 Zea mays GRMZM2G057408 I 0.711
ORUFI06G26070 Oryza rufipogon ORUFI06G26070 I 0.711
Si006883m.g Setaria italica Si006883m.g I 0.711
LPERR06G20160 Leersia perrieri LPERR06G20160 I 0.711
Gorai.007G013200 Gossypium raimondii Gorai.007G013200 I 0.711
ONIVA06G30670 Oryza nivara ONIVA06G30670 I 0.711
Pavir.Da00204 Panicum virgatum Pavir.Da00204 I 0.711
GRMZM2G170148 Zea mays GRMZM2G170148 I 0.711
Pavir.Db00388 Panicum virgatum Pavir.Db00388 I 0.711
OPUNC06G21970 Oryza punctata OPUNC06G21970 I 0.711
OGLUM06G25500 Oryza glumaepatula OGLUM06G25500 I 0.711
OMERI06G24490 Oryza meridionalis OMERI06G24490 I 0.711
BGIOSGA020708 Oryza indica BGIOSGA020708 I 0.711
OBART06G24250 Oryza barthii OBART06G24250 I 0.711
ORGLA06G0204000 Oryza glaberrima ORGLA06G0204000 I 0.711
Si006824m.g Setaria italica Si006824m.g I 0.711
OB06G10430 Oryza brachyantha OB06G10430 I 0.711
OB06G32000 Oryza brachyantha OB06G32000 I 0.711
mgf012072m Mimulus guttatus mgf012072m I 0.693
PRUPE_ppa008029mg Prunus persica PRUPE_ppa008029mg I 0.693
gw1.46.107.1 Physcomitrella patens gw1.46.107.1 I 0.693
Sb04g031820 Sorghum bicolor Sb04g031820 I 0.693
OS02G0680700 Oryza sativa OS02G0680700 I 0.693
ORGLA02G0240100 Oryza glaberrima ORGLA02G0240100 I 0.693
OPUNC02G25660 Oryza punctata OPUNC02G25660 I 0.693
ORUFI02G29430 Oryza rufipogon ORUFI02G29430 I 0.693
PGSC0003DMG400028896 Solanum tuberosum PGSC0003DMG400028896 I 0.693
POPTR_0014s08520 Populus trichocarpa POPTR_0014s08520 I 0.693
POPTR_0002s16460 Populus trichocarpa POPTR_0002s16460 I 0.693
Aquca_013_00181 Aquilegia coerulea Aquca_013_00181 I 0.693
Si017977m.g Setaria italica Si017977m.g I 0.693
Pm018226 Prunus mume Pm018226 I 0.693
cassava7251.valid.m1 Manihot esculenta cassava7251.valid.m1 I 0.693
Cla021528 Citrullus lanatus Cla021528 I 0.693
Cucsa.192960 Cucumis sativus Cucsa.192960 I 0.693
Cla005022 Citrullus lanatus Cla005022 I 0.693
cassava43544.valid.m1 Manihot esculenta cassava43544.valid.m1 I 0.693
30169.m006616 Ricinus communis 30169.m006616 I 0.693
cassava18981.valid.m1 Manihot esculenta cassava18981.valid.m1 I 0.693
cassava18980.valid.m1 Manihot esculenta cassava18980.valid.m1 I 0.693
cassava43542.valid.m1 Manihot esculenta cassava43542.valid.m1 I 0.693
cassava43543.valid.m1 Manihot esculenta cassava43543.valid.m1 I 0.693
Cucsa.258660 Cucumis sativus Cucsa.258660 I 0.693
VIT_15s0046g02260 Vitis vinifera VIT_15s0046g02260 I 0.693
fgenesh1_pg.scaffold_198000070 Physcomitrella patens fgenesh1_pg.scaffold_198000070 I 0.693
TCM_005269 Theobroma cacao TCM_005269 I 0.693
Solyc06g036300.2 Solanum lycopersicum Solyc06g036300.2 I 0.693
Solyc01g095030.2 Solanum lycopersicum Solyc01g095030.2 I 0.693
SELMODRAFT_78045 Selaginella moellendorffii SELMODRAFT_78045 I 0.693
TCM_015255 Theobroma cacao TCM_015255 I 0.693
fgenesh1_pg.scaffold_160000002 Physcomitrella patens fgenesh1_pg.scaffold_160000002 I 0.693
TRIUR3_10644 Triticum urartu TRIUR3_10644 I 0.693
Traes_7DL_AB55D9F4E Triticum aestivum Traes_7DL_AB55D9F4E I 0.693
Traes_6DL_30F715B53 Triticum aestivum Traes_6DL_30F715B53 I 0.693
Traes_6AL_362F82EAD Triticum aestivum Traes_6AL_362F82EAD I 0.693
SELMODRAFT_137893 Selaginella moellendorffii SELMODRAFT_137893 I 0.693
OGLUM02G28500 Oryza glumaepatula OGLUM02G28500 I 0.693
GLYMA07G07200 Glycine max GLYMA07G07200 I 0.693
evm.TU.supercontig_184.27 Carica papaya evm.TU.supercontig_184.27 I 0.693
F775_30481 Aegilops tauschii F775_30481 I 0.693
GLYMA10G37520 Glycine max GLYMA10G37520 I 0.693
ONIVA02G31050 Oryza nivara ONIVA02G31050 I 0.693
GLYMA20G30250 Glycine max GLYMA20G30250 I 0.693
Eucgr.A02733 Eucalyptus grandis Eucgr.A02733 I 0.693
GLYMA16G03640 Glycine max GLYMA16G03640 I 0.693
F775_09103 Aegilops tauschii F775_09103 I 0.693
BRADI3G51757 Brachypodium distachyon BRADI3G51757 I 0.693
BGIOSGA005842 Oryza indica BGIOSGA005842 I 0.693
PK02532.1 Cannabis sativa PK02532.1 D 0.693
AMTR_s00001p00261430 Amborella trichopoda AMTR_s00001p00261430 I 0.693
SapurV1A.0013s1130 Salix purpurea SapurV1A.0013s1130 I 0.693
Lus10036392.g Linum usitatissimum Lus10036392.g I 0.693
BRADI1G32330 Brachypodium distachyon BRADI1G32330 I 0.693
Gorai.008G274500 Gossypium raimondii Gorai.008G274500 I 0.693
Lus10007914.g Linum usitatissimum Lus10007914.g I 0.693
GRMZM2G118693 Zea mays GRMZM2G118693 I 0.693
Eucgr.D02320 Eucalyptus grandis Eucgr.D02320 I 0.693
MLOC_68189 Hordeum vulgare MLOC_68189 I 0.693
LPERR02G22740 Leersia perrieri LPERR02G22740 I 0.693
OB02G35240 Oryza brachyantha OB02G35240 I 0.693
OBART02G27940 Oryza barthii OBART02G27940 I 0.693
OMERI02G27110 Oryza meridionalis OMERI02G27110 I 0.693
cassava36811.valid.m1 Manihot esculenta cassava36811.valid.m1 I 0.693
GSMUA_Achr7G17560_001 Musa acuminata GSMUA_Achr7G17560_001 I 0.693
MLOC_56804 Hordeum vulgare MLOC_56804 I 0.693
GSMUA_Achr5G10280_001 Musa acuminata GSMUA_Achr5G10280_001 I 0.693
GSMUA_Achr1G06480_001 Musa acuminata GSMUA_Achr1G06480_001 I 0.693
GRMZM5G833032 Zea mays GRMZM5G833032 I 0.693
PGSC0003DMG400000189 Solanum tuberosum PGSC0003DMG400000189 I 0.690
GSMUA_Achr7G04620_001 Musa acuminata GSMUA_Achr7G04620_001 I 0.688
GSMUA_Achr1G03720_001 Musa acuminata GSMUA_Achr1G03720_001 I 0.686
SapurV1A.0247s0220 Salix purpurea SapurV1A.0247s0220 I 0.684
Carubv10001591m.g Capsella rubella Carubv10001591m.g I 0.684
SapurV1A.0804s0060 Salix purpurea SapurV1A.0804s0060 I 0.684
Thhalv10014025m.g Eutrema salsugineum Thhalv10014025m.g I 0.684
Thhalv10021220m.g Eutrema salsugineum Thhalv10021220m.g I 0.684
Bostr.2128s0168 Boechera stricta Bostr.2128s0168 I 0.684
PK06515.1 Cannabis sativa PK06515.1 I 0.684
Lus10014015.g Linum usitatissimum Lus10014015.g I 0.684
Gorai.006G178000 Gossypium raimondii Gorai.006G178000 I 0.684
gene18104-v1.0-hybrid Fragaria vesca gene18104-v1.0-hybrid I 0.684
evm.TU.supercontig_114.57 Carica papaya evm.TU.supercontig_114.57 I 0.684
Bostr.22252s0109 Boechera stricta Bostr.22252s0109 I 0.684
Cagra.2240s0021 Capsella grandiflora Cagra.2240s0021 I 0.684
Carubv10014328m.g Capsella rubella Carubv10014328m.g I 0.684
Cucsa.307250 Cucumis sativus Cucsa.307250 I 0.684
Eucgr.A01184 Eucalyptus grandis Eucgr.A01184 I 0.684
Lus10019902.g Linum usitatissimum Lus10019902.g I 0.684
Solyc10g084370.1 Solanum lycopersicum Solyc10g084370.1 I 0.684
LCL1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000163 I 0.684
Bra034074 Brassica rapa Bra034074 I 0.684
Bra029778 Brassica rapa Bra029778 I 0.684
fgenesh2_kg.3__982__AT3G09600.1 Arabidopsis lyrata fgenesh2_kg.3__982__AT3G09600.1 I 0.684
cassava12929.valid.m1 Manihot esculenta cassava12929.valid.m1 I 0.684
GLYMA13G19910 Glycine max GLYMA13G19910 I 0.684
GLYMA10G05560 Glycine max GLYMA10G05560 I 0.684
Bra009562 Brassica rapa Bra009562 I 0.684
Bra005751 Brassica rapa Bra005751 I 0.684
RVE4 Arabidopsis thaliana AT5G02840 D 0.684
RVE8 Arabidopsis thaliana AT3G09600 D 0.684
Bo1g144410 Brassica oleracea Bo1g144410 I 0.684
Bo3g002070 Brassica oleracea Bo3g002070 I 0.684
Bo9g183320 Brassica oleracea Bo9g183320 I 0.684
Bo5g138190 Brassica oleracea Bo5g138190 I 0.684
POPTR_0006s13530 Populus trichocarpa POPTR_0006s13530 I 0.684
GLYMA03G33440 Glycine max GLYMA03G33440 I 0.684
VIT_08s0040g03220 Vitis vinifera VIT_08s0040g03220 I 0.684
Cla018126 Citrullus lanatus Cla018126 I 0.684
29805.m001497 Ricinus communis 29805.m001497 I 0.684
cassava12928.valid.m1 Manihot esculenta cassava12928.valid.m1 I 0.684
POPTR_0016s08470 Populus trichocarpa POPTR_0016s08470 I 0.684
TCM_022074 Theobroma cacao TCM_022074 I 0.684
MDP0000298778 Malus domestica MDP0000298778 I 0.683
MDP0000325672 Malus domestica MDP0000325672 I 0.683
orange1.1g019104m.g Citrus sinensis orange1.1g019104m.g I 0.683
MDP0000254258 Malus domestica MDP0000254258 I 0.683
MDP0000140220 Malus domestica MDP0000140220 I 0.683
Lus10027521.g Linum usitatissimum Lus10027521.g I 0.683
Lus10039284.g Linum usitatissimum Lus10039284.g I 0.683
orange1.1g020389m.g Citrus sinensis orange1.1g020389m.g I 0.683
Bra003117 Brassica rapa Bra003117 I 0.683
Cagra.0084s0014 Capsella grandiflora Cagra.0084s0014 I 0.683
Bostr.7305s0060 Boechera stricta Bostr.7305s0060 I 0.683
RVE6 Arabidopsis thaliana AT5G52660 D 0.683
Thhalv10014069m.g Eutrema salsugineum Thhalv10014069m.g I 0.683
Bo3g023120 Brassica oleracea Bo3g023120 I 0.683
Pm019843 Prunus mume Pm019843 I 0.683
Bra029111 Brassica rapa Bra029111 I 0.683
Lus10038846.g Linum usitatissimum Lus10038846.g I 0.683
POPTR_0017s01140 Populus trichocarpa POPTR_0017s01140 I 0.683
mgf018328m Mimulus guttatus mgf018328m I 0.683
Al_scaffold_0008_1647 Arabidopsis lyrata Al_scaffold_0008_1647 I 0.683
Ciclev10005411m.g Citrus clementina Ciclev10005411m.g I 0.683
Ciclev10020939m.g Citrus clementina Ciclev10020939m.g I 0.683
PRUPE_ppa008749mg Prunus persica PRUPE_ppa008749mg I 0.683
gene13188-v1.0-hybrid Fragaria vesca gene13188-v1.0-hybrid I 0.683
Carubv10026677m.g Capsella rubella Carubv10026677m.g I 0.683
GLYMA19G36170 Glycine max GLYMA19G36170 I 0.682
mgf015175m Mimulus guttatus mgf015175m I 0.682
ORGLA06G0003400 Oryza glaberrima ORGLA06G0003400 I 0.676
Sb10g000590 Sorghum bicolor Sb10g000590 I 0.676
Pavir.Ca00604 Panicum virgatum Pavir.Ca00604 I 0.676
OS06G0105800 Oryza sativa OS06G0105800 I 0.676
GRMZM2G135052 Zea mays GRMZM2G135052 I 0.676
Gorai.004G159700 Gossypium raimondii Gorai.004G159700 I 0.674
Cucsa.108150 Cucumis sativus Cucsa.108150 I 0.671
LjT02J13.100.nc Lotus japonicus LjT02J13.100.nc I 0.662
MTR_0123s0070 Medicago truncatula MTR_0123s0070 I 0.662
Pavir.Aa00937 Panicum virgatum Pavir.Aa00937 I 0.662
Carubv10011679m.g Capsella rubella Carubv10011679m.g I 0.662
Bostr.5325s0070 Boechera stricta Bostr.5325s0070 I 0.662
AN Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000066 I 0.662
VIT_16s0050g01180 Vitis vinifera VIT_16s0050g01180 I 0.662
Cagra.1968s0093 Capsella grandiflora Cagra.1968s0093 I 0.662
Thhalv10008382m.g Eutrema salsugineum Thhalv10008382m.g I 0.662