CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J29846
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J29846
T289444_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN
NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.773
0.964
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J29846.1.p
Myb
11
57
KGPWSPEEDEALRRLVERHGARNWTAIGRGIPGRSGKSCRLRWCNQL
Pavir.J29846.1.p
Myb
63
99
RRPFTPEEDAAILAAHARLGNRWAAIARLLPGRTDNR
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy