Pavir.J30013 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J30013 T289445_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J30013.1.p Myb 30 77
Pavir.J30013.1.p Myb 84 128

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J35399 Panicum virgatum Pavir.J35399 N 0.909
Pavir.Gb01130 Panicum virgatum Pavir.Gb01130 N 0.901
Si012032m.g Setaria italica Si012032m.g N 0.901
OB04G27810 Oryza brachyantha OB04G27810 N 0.870
GRMZM2G105137 Zea mays GRMZM2G105137 N 0.847
Traes_2BL_855A1170C Triticum aestivum Traes_2BL_855A1170C N 0.843
Traes_2AL_0A21FB42C Triticum aestivum Traes_2AL_0A21FB42C N 0.843
Pavir.Fb01900 Panicum virgatum Pavir.Fb01900 N 0.842
OMERI04G17240 Oryza meridionalis OMERI04G17240 N 0.840
OGLUM04G20730 Oryza glumaepatula OGLUM04G20730 N 0.840
OBART04G20790 Oryza barthii OBART04G20790 N 0.840
ONIVA04G19030 Oryza nivara ONIVA04G19030 N 0.840
ORUFI04G22380 Oryza rufipogon ORUFI04G22380 N 0.840
BGIOSGA016880 Oryza indica BGIOSGA016880 N 0.840
ORGLA04G0178400 Oryza glaberrima ORGLA04G0178400 N 0.840
OPUNC04G18480 Oryza punctata OPUNC04G18480 N 0.840
evm.TU.supercontig_37.96 Carica papaya evm.TU.supercontig_37.96 N 0.838
TCM_005653 Theobroma cacao TCM_005653 N 0.838
Sb06g024510 Sorghum bicolor Sb06g024510 N 0.828
MDP0000237596 Malus domestica MDP0000237596 N 0.824
MDP0000319634 Malus domestica MDP0000319634 N 0.824
BRADI5G17600 Brachypodium distachyon BRADI5G17600 N 0.823
Pm031387 Prunus mume Pm031387 N 0.822
Pm019530 Prunus mume Pm019530 N 0.822
PRUPE_ppa016603mg Prunus persica PRUPE_ppa016603mg N 0.822
30174.m008784 Ricinus communis 30174.m008784 N 0.821
Pm017596 Prunus mume Pm017596 N 0.821
LjT36B17.50.nd Lotus japonicus LjT36B17.50.nd N 0.820
GRMZM2G311059 Zea mays GRMZM2G311059 N 0.818
Eucgr.E01581 Eucalyptus grandis Eucgr.E01581 N 0.818
Si015815m.g Setaria italica Si015815m.g N 0.814
SapurV1A.0033s0200 Salix purpurea SapurV1A.0033s0200 N 0.808
Carubv10019483m.g Capsella rubella Carubv10019483m.g N 0.808
Cagra.3527s0008 Capsella grandiflora Cagra.3527s0008 N 0.808
POPTR_0002s14180 Populus trichocarpa POPTR_0002s14180 N 0.808
Traes_2DL_912473A86 Triticum aestivum Traes_2DL_912473A86 N 0.808
Pavir.Fa00479 Panicum virgatum Pavir.Fa00479 N 0.808
Cla006831 Citrullus lanatus Cla006831 N 0.804
PRUPE_ppa020326mg Prunus persica PRUPE_ppa020326mg N 0.799
mgf019330m Mimulus guttatus mgf019330m N 0.796
DUO1 Vitis vinifera VIT_15s0021g02040 N 0.796
Ciclev10021345m.g Citrus clementina Ciclev10021345m.g N 0.796
orange1.1g038795m.g Citrus sinensis orange1.1g038795m.g N 0.796
GLYMA03G26830 Glycine max GLYMA03G26830 N 0.796
gene12261-v1.0-hybrid Fragaria vesca gene12261-v1.0-hybrid N 0.795
gene04800-v1.0-hybrid Fragaria vesca gene04800-v1.0-hybrid N 0.795
Bo8g095200 Brassica oleracea Bo8g095200 N 0.794
Bra007536 Brassica rapa Bra007536 N 0.794
SapurV1A.0490s0170 Salix purpurea SapurV1A.0490s0170 N 0.791
Solyc01g090530.1 Solanum lycopersicum Solyc01g090530.1 N 0.791
Gorai.004G165400 Gossypium raimondii Gorai.004G165400 N 0.790
Cucsa.121070 Cucumis sativus Cucsa.121070 N 0.790
Sb07g027160 Sorghum bicolor Sb07g027160 N 0.789
GLYMA07G14480 Glycine max GLYMA07G14480 N 0.787
Bra003413 Brassica rapa Bra003413 N 0.783
Bostr.13158s0042 Boechera stricta Bostr.13158s0042 N 0.783
DUO1 Arabidopsis thaliana AT3G60460 N 0.783
DUO1 Arabidopsis lyrata fgenesh2_kg.5__2511__AT3G60460.1 N 0.783
POPTR_0014s05420 Populus trichocarpa POPTR_0014s05420 N 0.783
POPTR_0014s05370 Populus trichocarpa POPTR_0014s05370 N 0.783
MTR_4g029540 Medicago truncatula MTR_4g029540 N 0.782
PGSC0003DMG400025720 Solanum tuberosum PGSC0003DMG400025720 N 0.779
MTR_8g006470 Medicago truncatula MTR_8g006470 N 0.778
cassava19913.m1 Manihot esculenta cassava19913.m1 N 0.776
cassava17368.m1 Manihot esculenta cassava17368.m1 N 0.776
Bo6g077030 Brassica oleracea Bo6g077030 N 0.774
Thhalv10006475m.g Eutrema salsugineum Thhalv10006475m.g N 0.773
GRMZM2G046443 Zea mays GRMZM2G046443 N 0.772
Aquca_002_00029 Aquilegia coerulea Aquca_002_00029 N 0.761
TCM_014872 Theobroma cacao TCM_014872 N 0.761
Cla010897 Citrullus lanatus Cla010897 N 0.759
Solyc10g019260.1 Solanum lycopersicum Solyc10g019260.1 N 0.744
Aquca_081_00025 Aquilegia coerulea Aquca_081_00025 N 0.742
Cucsa.094180 Cucumis sativus Cucsa.094180 N 0.734
Ca_19557 Cicer arietinum Ca_19557 N 0.733
Ca_18954 Cicer arietinum Ca_18954 N 0.728
GLYMA09G00371 Glycine max GLYMA09G00371 N 0.727
AMTR_s00111p00072510 Amborella trichopoda AMTR_s00111p00072510 N 0.725
GLYMA12G37026 Glycine max GLYMA12G37026 N 0.721
GSMUA_Achr1G01660_001 Musa acuminata GSMUA_Achr1G01660_001 N 0.721
Bostr.13158s0046 Boechera stricta Bostr.13158s0046 N 0.715
Lus10009780.g Linum usitatissimum Lus10009780.g N 0.699
mgf004314m Mimulus guttatus mgf004314m N 0.686
OLONG_013759 Oryza longistaminata OLONG_013759 N 0.686
SELMODRAFT_116971 Selaginella moellendorffii SELMODRAFT_116971 N 0.678
SELMODRAFT_118852 Selaginella moellendorffii SELMODRAFT_118852 N 0.678
Gorai.003G112700 Gossypium raimondii Gorai.003G112700 N 0.677
LPERR04G16870 Leersia perrieri LPERR04G16870 N 0.673