Pavir.J31094 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J31094 T289448_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.814 0.860
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.814 0.860
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.779 0.806
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.779 0.806
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.765 0.871
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.765 0.871
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J31094.1.p Myb 65 111
Pavir.J31094.1.p Myb 117 162

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

386 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pax6 Mus musculus ENSMUSG00000027168 D 0.000
PAX6 Homo sapiens ENSG00000007372 D 0.000
ACAC_0001290301 Angiostrongylus cantonensis ACAC_0001290301 I 0.000
ACOC_0000178201 Angiostrongylus costaricensis ACOC_0000178201 I 0.000
ANCCAN_01421 Ancylostoma caninum ANCCAN_01421 I 0.000
ANCCEY_08417 Ancylostoma ceylanicum ANCCEY_08417 I 0.000
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 I 0.000
D915_05709 Fasciola hepatica D915_05709 I 0.000
DILT_0000442801 Diphyllobothrium latum DILT_0000442801 I 0.000
ECANG7_07793 Echinococcus canadensis ECANG7_07793 I 0.000
ECPE_0000273501 Echinostoma caproni ECPE_0000273501 I 0.000
A_03128 Schistosoma haematobium A_03128 I 0.000
BGLB007764 Biomphalaria glabrata BGLB007764 I 0.000
BGLB002028 Biomphalaria glabrata BGLB002028 I 0.000
LCUP013028 Lucilia cuprina LCUP013028 I 0.000
LCUP015670 Lucilia cuprina LCUP015670 I 0.000
LDEC008984 Leptinotarsa decemlineata LDEC008984 I 0.000
Sjc_0004220 Schistosoma japonicum Sjc_0004220 I 0.000
Sjc_0077510 Schistosoma japonicum Sjc_0077510 I 0.000
AALB001179 Anopheles albimanus AALB001179 I 0.000
AATE019182 Anopheles atroparvus AATE019182 I 0.000
ACOM023323 Anopheles coluzzii ACOM023323 I 0.000
AMAM010937 Anopheles maculatus AMAM010937 I 0.000
ECPE_0001376401 Echinostoma caproni ECPE_0001376401 I 0.000
EmuJ_000389800 Echinococcus multilocularis EmuJ_000389800 I 0.000
EVEC_0000795701 Enterobius vermicularis EVEC_0000795701 I 0.000
OFLC_0001383501 Onchocerca flexuosa OFLC_0001383501 I 0.000
PXEA_0002614201 Protopolystoma xenopodis PXEA_0002614201 I 0.000
SBAD_0001213701 Soboliphyme baturini SBAD_0001213701 I 0.000
scaffold478-EXSNAP2012.12 Pristionchus exspectatus scaffold478-EXSNAP2012.12 I 0.000
SCUD_0000535601 Schistosoma curassoni SCUD_0000535601 I 0.000
SSLN_0001115101 Schistocephalus solidus SSLN_0001115101 I 0.000
TsM_000804100 Taenia solium TsM_000804100 I 0.000
TASK_0000210301 Taenia asiatica TASK_0000210301 I 0.000
TELCIR_00311 Teladorsagia circumcincta TELCIR_00311 I 0.000
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.000
nRc.2.0.1.g30341 Romanomermis culicivorax nRc.2.0.1.g30341 I 0.000
TTAC_0000709401 Hydatigera taeniaeformis TTAC_0000709401 I 0.000
HPBE_0000479901 Heligmosomoides bakeri HPBE_0000479901 I 0.000
L889_g29910 Steinernema feltiae L889_g29910 I 0.000
L893_g1041 Steinernema glaseri L893_g1041 I 0.000
nAv.1.0.1.g05236 Acanthocheilonema viteae nAv.1.0.1.g05236 I 0.000
nDi.2.2.2.g03678 Dirofilaria immitis nDi.2.2.2.g03678 I 0.000
NECAME_04524 Necator americanus NECAME_04524 I 0.000
nOo.2.0.1.g04580 Onchocerca ochengi nOo.2.0.1.g04580 I 0.000
nRc.2.0.1.g00894 Romanomermis culicivorax nRc.2.0.1.g00894 I 0.000
TRE_0000921601 Trichobilharzia regenti TRE_0000921601 I 0.000
ENSCSAVG00000007987 Ciona savignyi ENSCSAVG00000007987 I 0.000
ENSACAG00000011033 Anolis carolinensis ENSACAG00000011033 I 0.000
Pax5 Dipodomys ordii ENSDORG00000015818 I 0.000
ENSMEUG00000011758 Macropus eugenii ENSMEUG00000011758 I 0.000
PAX8 Microcebus murinus ENSMICG00000003265 I 0.000
PAX8 Ochotona princeps ENSOPRG00000012910 I 0.000
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.000
PAX5 Tupaia belangeri ENSTBEG00000007983 I 0.000
ENSTNIG00000013141 Tetraodon nigroviridis ENSTNIG00000013141 I 0.000
ENSTSYG00000008085 Tarsius syrichta ENSTSYG00000008085 I 0.000
PAX5 Tursiops truncatus ENSTTRG00000006049 I 0.000
DAPPUDRAFT_38922 Daphnia pulex DAPPUDRAFT_38922 I 0.000
DAPPUDRAFT_122807 Daphnia pulex DAPPUDRAFT_122807 I 0.000
pax6b Danio rerio ENSDARG00000045936 I 0.000
pax6a Danio rerio ENSDARG00000103379 I 0.000
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.000
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.000
WUBG_13045 Wuchereria bancrofti WUBG_13045 I 0.000
ACEP24464 Atta cephalotes ACEP24464 I 0.000
BGIBMGA009432 Bombyx mori BGIBMGA009432 I 0.000
BGIBMGA009545 Bombyx mori BGIBMGA009545 I 0.000
Bm14693 Brugia malayi Bm14693 I 0.000
CBG04481 Caenorhabditis briggsae CBG04481 I 0.000
PAX8 Vicugna pacos ENSVPAG00000003973 I 0.000
RPRC003362 Rhodnius prolixus RPRC003362 I 0.000
Ocbimv22011111m.g Octopus bimaculoides Ocbimv22011111m.g I 0.000
Ppa-vab-3 Pristionchus pacificus PPA03442 I 0.000
Cflo_05394--XP_001120031.1_APIME Camponotus floridanus Cflo_05394--XP_001120031.1_APIME I 0.000
RPRC001429 Rhodnius prolixus RPRC001429 I 0.000
YQE_05107 Dendroctonus ponderosae YQE_05107 I 0.000
SINV17241 Solenopsis invicta SINV17241 I 0.000
SPU_006786 Strongylocentrotus purpuratus SPU_006786 I 0.000
WBGene00241130 Onchocerca volvulus WBGene00241130 I 0.000
PHUM217120 Pediculus humanus PHUM217120 I 0.000
CLEC006621 Cimex lectularius CLEC006621 I 0.000
CLEC008846 Cimex lectularius CLEC008846 I 0.000
Sakowv30025789m.g Saccoglossus kowalevskii Sakowv30025789m.g I 0.000
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.000
AAC60302 Xenopus laevis AAC60302 I 0.000
KGM_02181 Danaus plexippus KGM_02181 I 0.000
HMEL009702 Heliconius melpomene HMEL009702 I 0.000
CLEC008733 Cimex lectularius CLEC008733 I 0.000
snap_masked-nMf.1.1.scaf10496-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf10496-processed-gene-0.3 N 0.000
ACEP20912 Atta cephalotes ACEP20912 N 0.000
SPER_0000208501 Spirometra erinaceieuropaei SPER_0000208501 N 0.000
PXEA_0001769401 Protopolystoma xenopodis PXEA_0001769401 N 0.000
PEQ_0001140301 Parascaris equorum PEQ_0001140301 N 0.000
DILT_0000606101 Diphyllobothrium latum DILT_0000606101 N 0.000
EEL_0000889701 Elaeophora elaphi EEL_0000889701 N 0.000
BTMF_0000869901 Brugia timori BTMF_0000869901 N 0.000
HDID_0000853801 Hymenolepis diminuta HDID_0000853801 N 0.000
ASU_08112 Ascaris suum ASU_08112 N 0.000
ANCDUO_03668 Ancylostoma duodenale ANCDUO_03668 N 0.000
LOAG_04187 Loa loa LOAG_04187 N 0.000
HMEL002395 Heliconius melpomene HMEL002395 N 0.000
ALUE_0000749601 Ascaris lumbricoides ALUE_0000749601 N 0.000
nLs.2.1.2.g01338 Litomosoides sigmodontis nLs.2.1.2.g01338 N 0.000
DME_0000186001 Dracunculus medinensis DME_0000186001 N 0.000
HmN_000735200 Hymenolepis microstoma HmN_000735200 N 0.000