Pavir.J31180 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J31180 T289449_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.690 0.828
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.669 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J31180.1.p Myb 19 66
Pavir.J31180.1.p Myb 72 117

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si004316m.g Setaria italica Si004316m.g I 0.861
GRMZM2G395672 Zea mays GRMZM2G395672 I 0.818
SapurV1A.0035s0030 Salix purpurea SapurV1A.0035s0030 I 0.769
VIT_08s0007g07230 Vitis vinifera VIT_08s0007g07230 I 0.767
orange1.1g036215m.g Citrus sinensis orange1.1g036215m.g I 0.762
Eucgr.B03606 Eucalyptus grandis Eucgr.B03606 I 0.756
TCM_024180 Theobroma cacao TCM_024180 I 0.756
TCM_025910 Theobroma cacao TCM_025910 I 0.756
BRADI2G47367 Brachypodium distachyon BRADI2G47367 I 0.754
GLYMA19G44660 Glycine max GLYMA19G44660 I 0.748
Ca_17627 Cicer arietinum Ca_17627 I 0.748
Gorai.003G021100 Gossypium raimondii Gorai.003G021100 I 0.747
Ca_01329 Cicer arietinum Ca_01329 I 0.745
mgf006108m Mimulus guttatus mgf006108m I 0.742
mgf015598m Mimulus guttatus mgf015598m I 0.742
GSMUA_Achr10G14030_001 Musa acuminata GSMUA_Achr10G14030_001 I 0.742
MDP0000157940 Malus domestica MDP0000157940 I 0.741
LjSGA_023691.1 Lotus japonicus LjSGA_023691.1 I 0.741
GSMUA_Achr5G06530_001 Musa acuminata GSMUA_Achr5G06530_001 I 0.741
PK23594.1 Cannabis sativa PK23594.1 I 0.740
Eucgr.C03151 Eucalyptus grandis Eucgr.C03151 I 0.739
Eucgr.A02110 Eucalyptus grandis Eucgr.A02110 I 0.737
chr1.CM0105.50.nd Lotus japonicus chr1.CM0105.50.nd I 0.736
MTR_8g027345 Medicago truncatula MTR_8g027345 I 0.734
MLOC_16037 Hordeum vulgare MLOC_16037 I 0.733
Gorai.007G260600 Gossypium raimondii Gorai.007G260600 I 0.732
GSMUA_Achr6G14840_001 Musa acuminata GSMUA_Achr6G14840_001 I 0.730
TRAES3BF026500080CFD_g Triticum aestivum TRAES3BF026500080CFD_g I 0.730
MTR_7g117730 Medicago truncatula MTR_7g117730 I 0.728
AMTR_s00068p00092800 Amborella trichopoda AMTR_s00068p00092800 I 0.727
AMTR_s00068p00097220 Amborella trichopoda AMTR_s00068p00097220 I 0.727
MDP0000655330 Malus domestica MDP0000655330 I 0.726
MDP0000723614 Malus domestica MDP0000723614 I 0.726
orange1.1g040726m.g Citrus sinensis orange1.1g040726m.g I 0.726
Ciclev10015648m.g Citrus clementina Ciclev10015648m.g I 0.726
SapurV1A.1276s0050 Salix purpurea SapurV1A.1276s0050 I 0.726
PDK_20s1310471g002 Phoenix dactylifera PDK_20s1310471g002 I 0.726
cassava9274.m1 Manihot esculenta cassava9274.m1 I 0.726
GSMUA_Achr7G13700_001 Musa acuminata GSMUA_Achr7G13700_001 I 0.723
evm.TU.supercontig_51.138 Carica papaya evm.TU.supercontig_51.138 I 0.723
Gorai.007G350500 Gossypium raimondii Gorai.007G350500 I 0.723
PGSC0003DMG400005848 Solanum tuberosum PGSC0003DMG400005848 I 0.723
cassava6348.valid.m1 Manihot esculenta cassava6348.valid.m1 I 0.723
cassava34176.m1 Manihot esculenta cassava34176.m1 I 0.723
PRUPE_ppa006730mg Prunus persica PRUPE_ppa006730mg I 0.723
Solyc08g082890.2 Solanum lycopersicum Solyc08g082890.2 I 0.722
PGSC0003DMG400012126 Solanum tuberosum PGSC0003DMG400012126 I 0.722
Solyc08g008480.2 Solanum lycopersicum Solyc08g008480.2 I 0.720
LPERR01G23630 Leersia perrieri LPERR01G23630 I 0.720
GLYMA16G02570 Glycine max GLYMA16G02570 I 0.719
GLYMA07G05960 Glycine max GLYMA07G05960 I 0.719
Solyc01g005660.1 Solanum lycopersicum Solyc01g005660.1 I 0.719
mgf001865m Mimulus guttatus mgf001865m I 0.718
evm.TU.supercontig_119.55 Carica papaya evm.TU.supercontig_119.55 I 0.717
AMTR_s00068p00099460 Amborella trichopoda AMTR_s00068p00099460 I 0.717
ORGLA01G0227100 Oryza glaberrima ORGLA01G0227100 I 0.717
OS01G0695900 Oryza sativa OS01G0695900 I 0.717
POPTR_0003s21120 Populus trichocarpa POPTR_0003s21120 I 0.717
OLONG_002608 Oryza longistaminata OLONG_002608 I 0.717
ORUFI01G30610 Oryza rufipogon ORUFI01G30610 I 0.717
POPTR_0013s05300 Populus trichocarpa POPTR_0013s05300 I 0.717
BGIOSGA004260 Oryza indica BGIOSGA004260 I 0.717
Gorai.004G150800 Gossypium raimondii Gorai.004G150800 I 0.717
SapurV1A.0553s0100 Salix purpurea SapurV1A.0553s0100 I 0.717
SapurV1A.0081s0400 Salix purpurea SapurV1A.0081s0400 I 0.717
MDP0000791870 Malus domestica MDP0000791870 I 0.717
SapurV1A.0553s0110 Salix purpurea SapurV1A.0553s0110 I 0.717
POPTR_0001s04240 Populus trichocarpa POPTR_0001s04240 I 0.714
Pm018338 Prunus mume Pm018338 I 0.713
PRUPE_ppa009439mg Prunus persica PRUPE_ppa009439mg I 0.713
POPTR_0019s05210 Populus trichocarpa POPTR_0019s05210 I 0.712
Cucsa.304110 Cucumis sativus Cucsa.304110 I 0.712
Eucgr.D02390 Eucalyptus grandis Eucgr.D02390 I 0.710
Ciclev10021571m.g Citrus clementina Ciclev10021571m.g I 0.710
Gorai.008G126700 Gossypium raimondii Gorai.008G126700 I 0.710
orange1.1g040841m.g Citrus sinensis orange1.1g040841m.g I 0.710
PK14784.1 Cannabis sativa PK14784.1 I 0.710
gene18691-v1.0-hybrid Fragaria vesca gene18691-v1.0-hybrid I 0.710
MDP0000915330 Malus domestica MDP0000915330 I 0.710
evm.TU.supercontig_96.57 Carica papaya evm.TU.supercontig_96.57 I 0.710
SapurV1A.0918s0130 Salix purpurea SapurV1A.0918s0130 I 0.708
mgf025197m Mimulus guttatus mgf025197m I 0.708
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.707
GSMUA_Achr2G19380_001 Musa acuminata GSMUA_Achr2G19380_001 I 0.706
SapurV1A.0059s0150 Salix purpurea SapurV1A.0059s0150 I 0.706
POPTR_0001s11100 Populus trichocarpa POPTR_0001s11100 I 0.706
30068.m002544 Ricinus communis 30068.m002544 I 0.706
POPTR_0003s14420 Populus trichocarpa POPTR_0003s14420 I 0.706
Eucgr.D01701 Eucalyptus grandis Eucgr.D01701 I 0.705
Lus10013762.g Linum usitatissimum Lus10013762.g I 0.703
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.702
Aquca_009_00496 Aquilegia coerulea Aquca_009_00496 I 0.702
GLYMA14G24500 Glycine max GLYMA14G24500 I 0.702
GLYMA13G09980 Glycine max GLYMA13G09980 I 0.702
SapurV1A.1276s0060 Salix purpurea SapurV1A.1276s0060 I 0.702
SapurV1A.0598s0010 Salix purpurea SapurV1A.0598s0010 I 0.701
TCM_029121 Theobroma cacao TCM_029121 I 0.701
LjT20L14.140.nd Lotus japonicus LjT20L14.140.nd I 0.700
GRMZM2G419239 Zea mays GRMZM2G419239 I 0.695
VIT_06s0004g00570 Vitis vinifera VIT_06s0004g00570 I 0.695
SapurV1A.0059s0160 Salix purpurea SapurV1A.0059s0160 I 0.694
POPTR_0003s14430 Populus trichocarpa POPTR_0003s14430 I 0.694
VIT_15s0046g00170 Vitis vinifera VIT_15s0046g00170 I 0.693
Gorai.004G151000 Gossypium raimondii Gorai.004G151000 I 0.693
GRMZM2G701063 Zea mays GRMZM2G701063 I 0.693
Gorai.004G044000 Gossypium raimondii Gorai.004G044000 I 0.692
TCM_015685 Theobroma cacao TCM_015685 I 0.691
cassava36364.valid.m1 Manihot esculenta cassava36364.valid.m1 I 0.690
Q2TCH0_PETHY Petunia x hybrida Q2TCH0_PETHY D 0.690
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I 0.690
Lus10039173.g Linum usitatissimum Lus10039173.g I 0.690
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I 0.690
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I 0.690
SapurV1A.0013s0160 Salix purpurea SapurV1A.0013s0160 I 0.689
POPTR_0014s09630 Populus trichocarpa POPTR_0014s09630 I 0.689
Pavir.Db02046 Panicum virgatum Pavir.Db02046 I 0.689
TCM_037377 Theobroma cacao TCM_037377 I 0.689
cassava29820.valid.m1 Manihot esculenta cassava29820.valid.m1 I 0.689
AMTR_s00024p00250970 Amborella trichopoda AMTR_s00024p00250970 I 0.688
Cla011528 Citrullus lanatus Cla011528 I 0.688
AMTR_s00030p00146410 Amborella trichopoda AMTR_s00030p00146410 I 0.687
F775_19148 Aegilops tauschii F775_19148 I 0.686
Traes_4DL_26A958CDD Triticum aestivum Traes_4DL_26A958CDD I 0.686
GSMUA_Achr3G21000_001 Musa acuminata GSMUA_Achr3G21000_001 I 0.686
AMTR_s00068p00118480 Amborella trichopoda AMTR_s00068p00118480 I 0.686
Eucgr.C00722 Eucalyptus grandis Eucgr.C00722 I 0.685
PRUPE_ppa023789mg Prunus persica PRUPE_ppa023789mg I 0.684
Aquca_009_00493 Aquilegia coerulea Aquca_009_00493 I 0.683
TRIUR3_22706 Triticum urartu TRIUR3_22706 I 0.683
Traes_6AS_5562B97F7 Triticum aestivum Traes_6AS_5562B97F7 I 0.683
Traes_6DS_A0EC5D808 Triticum aestivum Traes_6DS_A0EC5D808 I 0.683
F775_14392 Aegilops tauschii F775_14392 I 0.683
Bra039395 Brassica rapa Bra039395 I 0.682
PK13689.1 Cannabis sativa PK13689.1 I 0.682
ORUFI06G06900 Oryza rufipogon ORUFI06G06900 I 0.682
MTR_3g083540 Medicago truncatula MTR_3g083540 I 0.682
ATMYB5 Arabidopsis lyrata scaffold_301556.1 I 0.682
Bostr.3640s0147 Boechera stricta Bostr.3640s0147 I 0.682
OB06G16110 Oryza brachyantha OB06G16110 I 0.682
ORGLA06G0059500 Oryza glaberrima ORGLA06G0059500 I 0.682
Thhalv10022057m.g Eutrema salsugineum Thhalv10022057m.g I 0.682
SapurV1A.0003s0900 Salix purpurea SapurV1A.0003s0900 I 0.682
MYB5 Arabidopsis thaliana AT3G13540 I 0.682
POPTR_0002s17460 Populus trichocarpa POPTR_0002s17460 I 0.682
Eucgr.E01031 Eucalyptus grandis Eucgr.E01031 I 0.681
SapurV1A.0035s0040 Salix purpurea SapurV1A.0035s0040 I 0.681
GRMZM2G084583 Zea mays GRMZM2G084583 I 0.680
TCM_037555 Theobroma cacao TCM_037555 I 0.680
Gorai.010G087200 Gossypium raimondii Gorai.010G087200 I 0.680
F775_42516 Aegilops tauschii F775_42516 I 0.680
Pm024189 Prunus mume Pm024189 I 0.679
PRUPE_ppa018430mg Prunus persica PRUPE_ppa018430mg I 0.679
PRUPE_ppa010846mg Prunus persica PRUPE_ppa010846mg I 0.678
cassava36365.valid.m1 Manihot esculenta cassava36365.valid.m1 I 0.677
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.677
gene08694-v1.0-hybrid Fragaria vesca gene08694-v1.0-hybrid I 0.676
Bo1g138250 Brassica oleracea Bo1g138250 I 0.676
Solyc05g008250.1 Solanum lycopersicum Solyc05g008250.1 I 0.676
PK11717.1 Cannabis sativa PK11717.1 I 0.675
TRIUR3_09734 Triticum urartu TRIUR3_09734 I 0.675
SapurV1A.0120s0010 Salix purpurea SapurV1A.0120s0010 I 0.675
28226.m000839 Ricinus communis 28226.m000839 I 0.675
Pm029185 Prunus mume Pm029185 I 0.675
Traes_4DL_8A9D9ACCB Triticum aestivum Traes_4DL_8A9D9ACCB I 0.674
cassava28702.m1 Manihot esculenta cassava28702.m1 I 0.674
Gorai.005G162600 Gossypium raimondii Gorai.005G162600 I 0.673
TCM_010839 Theobroma cacao TCM_010839 I 0.673
AMTR_s00005p00268890 Amborella trichopoda AMTR_s00005p00268890 I 0.673
GSMUA_Achr3G07940_001 Musa acuminata GSMUA_Achr3G07940_001 I 0.672
MTR_4g125520 Medicago truncatula MTR_4g125520 I 0.672
F775_17212 Aegilops tauschii F775_17212 I 0.672
Gorai.001G020400 Gossypium raimondii Gorai.001G020400 I 0.672
PDK_20s1554342g001 Phoenix dactylifera PDK_20s1554342g001 I 0.672
PGSC0003DMG400030548 Solanum tuberosum PGSC0003DMG400030548 I 0.672
Bostr.12659s0116 Boechera stricta Bostr.12659s0116 I 0.672
Cagra.0690s0007 Capsella grandiflora Cagra.0690s0007 I 0.671
MDP0000211677 Malus domestica MDP0000211677 I 0.671
cassava25868.m1 Manihot esculenta cassava25868.m1 I 0.671
MDP0000196982 Malus domestica MDP0000196982 I 0.671
gene25098-v1.0-hybrid Fragaria vesca gene25098-v1.0-hybrid I 0.671
MDP0000209761 Malus domestica MDP0000209761 I 0.671
Carubv10014443m.g Capsella rubella Carubv10014443m.g I 0.671
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.671
Eucgr.I00012 Eucalyptus grandis Eucgr.I00012 I 0.670
GSMUA_Achr10G16010_001 Musa acuminata GSMUA_Achr10G16010_001 I 0.670
TCM_000535 Theobroma cacao TCM_000535 I 0.670
Sb10g006700 Sorghum bicolor Sb10g006700 I 0.670
OB03G30160 Oryza brachyantha OB03G30160 I 0.669
Bra012337 Brassica rapa Bra012337 I 0.669
Bo8g071580 Brassica oleracea Bo8g071580 I 0.669
SapurV1A.0710s0050 Salix purpurea SapurV1A.0710s0050 I 0.669
ATMYB3 Arabidopsis lyrata fgenesh2_kg.1__2457__AT1G22640.1 I 0.669
ORGLA03G0196700 Oryza glaberrima ORGLA03G0196700 I 0.669
Thhalv10008456m.g Eutrema salsugineum Thhalv10008456m.g I 0.669
MYB3 Arabidopsis thaliana AT1G22640 D 0.669
Bo7g057770 Brassica oleracea Bo7g057770 I 0.669
Carubv10009761m.g Capsella rubella Carubv10009761m.g I 0.669
Cagra.0114s0040 Capsella grandiflora Cagra.0114s0040 I 0.669
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.668
MDP0000167107 Malus domestica MDP0000167107 I 0.668
POPTR_0019s05200 Populus trichocarpa POPTR_0019s05200 I 0.667
VIT_17s0000g02650 Vitis vinifera VIT_17s0000g02650 I 0.667
POPTR_0019s05190 Populus trichocarpa POPTR_0019s05190 I 0.667
MDP0000250597 Malus domestica MDP0000250597 I 0.667
MDP0000210851 Malus domestica MDP0000210851 I 0.666
BGIOSGA026527 Oryza indica BGIOSGA026527 I 0.666
BGIOSGA026525 Oryza indica BGIOSGA026525 I 0.666
VIT_11s0016g01300 Vitis vinifera VIT_11s0016g01300 I 0.666
TCM_037559 Theobroma cacao TCM_037559 I 0.666
Pm005570 Prunus mume Pm005570 I 0.666
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.666
SapurV1A.0710s0070 Salix purpurea SapurV1A.0710s0070 I 0.666
PRUPE_ppa022205mg Prunus persica PRUPE_ppa022205mg I 0.666
ORGLA08G0216900 Oryza glaberrima ORGLA08G0216900 I 0.666
OB08G29560 Oryza brachyantha OB08G29560 I 0.666
Gorai.002G180300 Gossypium raimondii Gorai.002G180300 I 0.666
POPTR_0006s23840 Populus trichocarpa POPTR_0006s23840 I 0.666
MDP0000031172 Malus domestica MDP0000031172 I 0.666
ORUFI08G25300 Oryza rufipogon ORUFI08G25300 I 0.666
TCM_037379 Theobroma cacao TCM_037379 I 0.665
PDK_20s1716541g001 Phoenix dactylifera PDK_20s1716541g001 I 0.665
cassava27189.m1 Manihot esculenta cassava27189.m1 I 0.665
Bra027423 Brassica rapa Bra027423 I 0.665
TCM_005112 Theobroma cacao TCM_005112 I 0.665
TCM_000174 Theobroma cacao TCM_000174 I 0.665
GSMUA_Achr8G32480_001 Musa acuminata GSMUA_Achr8G32480_001 I 0.665
SapurV1A.0163s0150 Salix purpurea SapurV1A.0163s0150 I 0.664
Eucgr.B02896 Eucalyptus grandis Eucgr.B02896 I 0.664
POPTR_0010s12420 Populus trichocarpa POPTR_0010s12420 I 0.664
Pm005571 Prunus mume Pm005571 I 0.664
Eucgr.G02195 Eucalyptus grandis Eucgr.G02195 I 0.664
VIT_01s0011g04760 Vitis vinifera VIT_01s0011g04760 I 0.664
cassava29110.valid.m1 Manihot esculenta cassava29110.valid.m1 I 0.664
AMTR_s00024p00224180 Amborella trichopoda AMTR_s00024p00224180 I 0.663
gene15392-v1.0-hybrid Fragaria vesca gene15392-v1.0-hybrid I 0.663
cassava7672.valid.m1 Manihot esculenta cassava7672.valid.m1 I 0.663
Eucgr.C00721 Eucalyptus grandis Eucgr.C00721 I 0.663
POPTR_0018s05750 Populus trichocarpa POPTR_0018s05750 I 0.663
TCM_004509 Theobroma cacao TCM_004509 I 0.663
TCM_037376 Theobroma cacao TCM_037376 I 0.663
VIT_04s0008g01800 Vitis vinifera VIT_04s0008g01800 I 0.663
Ca_03154 Cicer arietinum Ca_03154 I 0.663
GLYMA13G16890 Glycine max GLYMA13G16890 I 0.663
POPTR_0018s05530 Populus trichocarpa POPTR_0018s05530 I 0.663
GLYMA17G05831 Glycine max GLYMA17G05831 I 0.663
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I 0.663
GSMUA_Achr8G22690_001 Musa acuminata GSMUA_Achr8G22690_001 I 0.663
GSMUA_Achr6G04400_001 Musa acuminata GSMUA_Achr6G04400_001 I 0.663
POPTR_0006s29080 Populus trichocarpa POPTR_0006s29080 I 0.663
GLYMA20G32500 Glycine max GLYMA20G32500 I 0.662
PDK_20s1918041g001 Phoenix dactylifera PDK_20s1918041g001 I 0.661
Bra036145 Brassica rapa Bra036145 I 0.661
TCM_010778 Theobroma cacao TCM_010778 I 0.661
Si038905m.g Setaria italica Si038905m.g I 0.661
Eucgr.C03554 Eucalyptus grandis Eucgr.C03554 I 0.661
Sb01g032770 Sorghum bicolor Sb01g032770 I 0.661
Thhalv10004518m.g Eutrema salsugineum Thhalv10004518m.g I 0.661
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.661