Pavir.J35324 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J35324 T289461_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN

NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.795 0.872
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN

NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.777 0.809
AT3G16350
M01078_2.00
Arabidopsis thaliana
NYTATCYDNN

NNHRGATARN
PBM
Sullivan et al.(2014)
pTH7149
0.774 0.830
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD

HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
0.765 0.809
PK29550.1
M02358_2.00
Cannabis sativa
NNHDATCYNN

NNRGATHDNN
PBM
Weirauch et al.(2014)
pTH9595
0.764 0.809
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN

NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.736 0.809
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW

WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.736 0.809
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW

WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.736 0.809
AT5G61620
M07149_2.00
Arabidopsis thaliana
WWHHTTATCCAHWWN

NWWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
AT5G61620_col_a
0.728 0.787
AT5G61620
M07150_2.00
Arabidopsis thaliana
YHTTATCCAHW

WDTGGATAADR
Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a
0.728 0.787
PK00738.1
M02346_2.00
Cannabis sativa
NYWATCYDNN

NNHRGATWRN
PBM
Weirauch et al.(2014)
pTH9487
0.715 0.787
AT1G19000
M02287_2.00
Arabidopsis thaliana
NYTATCYDNN

NNHRGATARN
PBM
Weirauch et al.(2014)
pTH7120
0.703 0.745
AT1G19000
M07012_2.00
Arabidopsis thaliana
HDYHTTATCCAHWW

WWDTGGATAADRHD
Dap-seq
OMalley et al.(2016)
At1g19000_col_a
0.703 0.745
AT1G19000
M07013_2.00
Arabidopsis thaliana
WDYNTTATCCAHWW

WWDTGGATAANRHW
Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a
0.703 0.745
0600010132
M02360_2.00
Ostreococcus tauri
NNVTTATCCDNNN

NNNHGGATAABNN
PBM
Weirauch et al.(2014)
pTH9441
0.697 0.809
AT5G56840
M07144_2.00
Arabidopsis thaliana
WWYMTTATCCAWWWN

NWWWTGGATAAKRWW
Dap-seq
OMalley et al.(2016)
AT5G56840_col_a
0.685 0.809
AT5G56840
M07145_2.00
Arabidopsis thaliana
HHHWWYHTTATCCWHW

WDWGGATAADRWWDDD
Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a
0.685 0.809
AT3G10580
M07072_2.00
Arabidopsis thaliana
AWBCTTATCYWHWHH

DDWDWRGATAAGVWT
Dap-seq
OMalley et al.(2016)
AT3G10580_col_a
0.662 0.681
AT3G10580
M07073_2.00
Arabidopsis thaliana
CCGAWAAWNTCGGDD

HHCCGANWTTWTCGG
Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a
0.662 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J35324.1.p Myb 141 188

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

531 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA002351 Oryza indica BGIOSGA002351 N 0.000
Bo9g177030 Brassica oleracea Bo9g177030 N 0.000
Bra009123 Brassica rapa Bra009123 N 0.000
Ciclev10030684m.g Citrus clementina Ciclev10030684m.g N 0.000
GLYMA18G03080 Glycine max GLYMA18G03080 N 0.000
GRMZM2G139369 Zea mays GRMZM2G139369 N 0.000
LjT47B05.50.nd Lotus japonicus LjT47B05.50.nd N 0.000
LPERR01G03530 Leersia perrieri LPERR01G03530 N 0.000
MTR_3g070780 Medicago truncatula MTR_3g070780 N 0.000
OB01G13760 Oryza brachyantha OB01G13760 N 0.000
OBART01G03880 Oryza barthii OBART01G03880 N 0.000
OGLUM01G04180 Oryza glumaepatula OGLUM01G04180 N 0.000
OLONG_021562 Oryza longistaminata OLONG_021562 N 0.000
OMERI01G03770 Oryza meridionalis OMERI01G03770 N 0.000
ONIVA01G04320 Oryza nivara ONIVA01G04320 N 0.000
ORGLA01G0034200 Oryza glaberrima ORGLA01G0034200 N 0.000
ORUFI01G03990 Oryza rufipogon ORUFI01G03990 N 0.000
OS01G0158900 Oryza sativa OS01G0158900 N 0.000
Pavir.J07154 Panicum virgatum Pavir.J07154 N 0.000
PK03289.1 Cannabis sativa PK03289.1 N 0.000
POPTR_0010s19600 Populus trichocarpa POPTR_0010s19600 N 0.000
Sb03g005310 Sorghum bicolor Sb03g005310 N 0.000
Si000223m.g Setaria italica Si000223m.g N 0.000