CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SapurV1A.0040s0420
(
Salix purpurea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
SapurV1A.0040s0420
T289536_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK21687.1
M01282_2.00
Cannabis sativa
HWAAACCYH
DRGGTTTWD
PBM
Lambert et al.(2019)
pTH11299
0.891
0.957
TRP1
M07148_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP1_col
0.891
0.936
TRP2
M07092_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_col_a
0.883
0.936
TRP2
M07093_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_colamp_a
0.883
0.936
TRP5
M01266_2.00
Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN
PBM
Lambert et al.(2019)
pTH9963
0.831
0.915
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.0040s0420.1.p
Myb
565
615
RRPFSVTEVEALVHAVEKLGTGRWRDVKLQAFDNAKHRTYVDLKDKWKTLV
SapurV1A.0040s0420.2.p
Myb
393
443
RRPFSVTEVEALVHAVEKLGTGRWRDVKLQAFDNAKHRTYVDLKDKWKTLV
SapurV1A.0040s0420.3.p
Myb
384
434
RRPFSVTEVEALVHAVEKLGTGRWRDVKLQAFDNAKHRTYVDLKDKWKTLV
SapurV1A.0040s0420.4.p
Myb
384
414
RRPFSVTEVEALVHAVEKLGTGRWRDVKLQA
Links
Other
Myb/SANT
family TFs
Other
Salix purpurea
TFs
207 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy