CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SapurV1A.0235s0100
(
Salix purpurea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
SapurV1A.0235s0100
T289656_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.786
0.872
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR
YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.786
0.872
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.786
0.872
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.786
0.872
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.772
0.915
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.693
0.809
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.0235s0100.13.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.14.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.15.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.1.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.2.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.3.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.4.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.5.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.6.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
SapurV1A.0235s0100.7.p
Myb
5
57
KQKWTAEEEAALKAGVLKHGTGKWRTILMDPDFSAVLSLRSNVDLKDKWRNIN
Links
Other
Myb/SANT
family TFs
Other
Salix purpurea
TFs
195 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy