CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SapurV1A.1730s0020
(
Salix purpurea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
SapurV1A.1730s0020
T289867_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY
RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.749
0.785
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.749
0.785
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.746
0.785
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.703
0.742
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC
GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.696
0.688
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.696
0.688
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.696
0.688
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD
HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.681
0.720
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.681
0.720
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.681
0.720
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.1730s0020.1.p
Myb
13
60
KGAWSAQEDQKLIDYIKTHGEGCWRSLPVAAGLHRCGKSCRLRWINYL
SapurV1A.1730s0020.1.p
Myb
66
111
RGNFGQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHL
SapurV1A.1730s0020.2.p
Myb
13
60
KGAWSAQEDQKLIDYIKTHGEGCWRSLPVAAGLHRCGKSCRLRWINYL
SapurV1A.1730s0020.2.p
Myb
66
111
RGNFGQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHL
SapurV1A.1730s0020.3.p
Myb
13
60
KGAWSAQEDQKLIDYIKTHGEGCWRSLPVAAGLHRCGKSCRLRWINYL
SapurV1A.1730s0020.3.p
Myb
66
111
RGNFGQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHL
Links
Other
Myb/SANT
family TFs
Other
Salix purpurea
TFs
1013 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy