CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10000498m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10000498m.g
T289921_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.679
0.660
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB
VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.679
0.660
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.679
0.660
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10000498m
Myb
51
102
RLRWTTDLHRYFLHAVEQLGGEKRATPKKILKSMGVKTLTLSHVKSHLQVYR
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy