CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10004407m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10004407m.g
T289950_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB51
M07010_2.00
Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN
Dap-seq
OMalley et al.(2016)
MYB51_col_a
0.718
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10004406m
Myb
14
61
KGAWTTEEDKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWTNYL
Thhalv10004406m
Myb
67
112
RGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHL
Thhalv10004407m
Myb
14
61
KGAWTTEEDKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWTNYL
Thhalv10004407m
Myb
67
112
RGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
97 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra035929
Brassica rapa
Bra035929
I
0.909
Bo9g014610
Brassica oleracea
Bo9g014610
I
0.909
Bra012961
Brassica rapa
Bra012961
I
0.899
Bo7g098590
Brassica oleracea
Bo7g098590
I
0.899
Cagra.0542s0036
Capsella grandiflora
Cagra.0542s0036
I
0.879
Carubv10027861m.g
Capsella rubella
Carubv10027861m.g
I
0.879
Bostr.26833s0098
Boechera stricta
Bostr.26833s0098
I
0.879
MYB28
Arabidopsis lyrata
scaffold_802785.1
I
0.879
MYB28
Arabidopsis thaliana
AT5G61420
I
0.879
Cagra.2925s0017
Capsella grandiflora
Cagra.2925s0017
I
0.875
Carubv10001328m.g
Capsella rubella
Carubv10001328m.g
I
0.875
Bo9g175680
Brassica oleracea
Bo9g175680
I
0.865
Bo2g161590
Brassica oleracea
Bo2g161590
I
0.862
Bostr.13129s0197
Boechera stricta
Bostr.13129s0197
I
0.858
MYB29
Arabidopsis thaliana
AT5G07690
I
0.858
Thhalv10013952m.g
Eutrema salsugineum
Thhalv10013952m.g
I
0.858
Bra029311
Brassica rapa
Bra029311
I
0.854
Bra005949
Brassica rapa
Bra005949
I
0.843
MYB76
Arabidopsis thaliana
AT5G07700
I
0.842
MYB29
Arabidopsis lyrata
fgenesh2_kg.6__738__AT5G07690.1
I
0.842
Bo3g004500
Brassica oleracea
Bo3g004500
I
0.835
MYB76
Arabidopsis lyrata
Al_scaffold_0006_698
I
0.825
cassava44039.valid.m1
Manihot esculenta
cassava44039.valid.m1
I
0.819
cassava46146.m1
Manihot esculenta
cassava46146.m1
I
0.811
Lus10019085.g
Linum usitatissimum
Lus10019085.g
I
0.804
cassava47112.m1
Manihot esculenta
cassava47112.m1
I
0.780
cassava46145.m1
Manihot esculenta
cassava46145.m1
I
0.766
Bostr.13129s0196
Boechera stricta
Bostr.13129s0196
I
0.761
PK27708.1
Cannabis sativa
PK27708.1
I
0.749
evm.TU.supercontig_3.239
Carica papaya
evm.TU.supercontig_3.239
I
0.749
ATMYB122
Arabidopsis lyrata
fgenesh2_kg.2__1680__AT1G74080.1
I
0.725
Bo5g025570
Brassica oleracea
Bo5g025570
I
0.721
Thhalv10008152m.g
Eutrema salsugineum
Thhalv10008152m.g
I
0.721
Bra025666
Brassica rapa
Bra025666
I
0.721
MYB122
Arabidopsis thaliana
AT1G74080
I
0.720
Bo6g118350
Brassica oleracea
Bo6g118350
I
0.719
Bra015939
Brassica rapa
Bra015939
I
0.719
Carubv10009563m.g
Capsella rubella
Carubv10009563m.g
I
0.718
Cagra.4153s0023
Capsella grandiflora
Cagra.4153s0023
I
0.718
Bostr.7128s0464
Boechera stricta
Bostr.7128s0464
I
0.718
MYB51
Arabidopsis thaliana
AT1G18570
D
0.718
MYB51
Arabidopsis lyrata
fgenesh2_kg.1__2031__AT1G18570.1
I
0.718
Bo2g080900
Brassica oleracea
Bo2g080900
I
0.714
TCM_014091
Theobroma cacao
TCM_014091
I
0.711
Bra031035
Brassica rapa
Bra031035
I
0.711
Bo8g104300
Brassica oleracea
Bo8g104300
I
0.711
Bo8g067910
Brassica oleracea
Bo8g067910
I
0.710
Bra016553
Brassica rapa
Bra016553
I
0.710
Bo9g014380
Brassica oleracea
Bo9g014380
I
0.708
Bra035954
Brassica rapa
Bra035954
I
0.708
Bra008131
Brassica rapa
Bra008131
I
0.703
PK14811.1
Cannabis sativa
PK14811.1
I
0.702
Thhalv10018705m.g
Eutrema salsugineum
Thhalv10018705m.g
I
0.700
cassava24756.valid.m1
Manihot esculenta
cassava24756.valid.m1
I
0.699
PK01174.1
Cannabis sativa
PK01174.1
I
0.698
Bostr.26833s0149
Boechera stricta
Bostr.26833s0149
I
0.697
Bra013000
Brassica rapa
Bra013000
I
0.697
Carubv10027524m.g
Capsella rubella
Carubv10027524m.g
I
0.697
ATMYB34
Arabidopsis lyrata
fgenesh2_kg.8__2056__AT5G60890.1
I
0.697
MYB34
Arabidopsis thaliana
AT5G60890
I
0.697
Thhalv10004638m.g
Eutrema salsugineum
Thhalv10004638m.g
I
0.697
Gorai.003G097900
Gossypium raimondii
Gorai.003G097900
I
0.696
Bo7g098110
Brassica oleracea
Bo7g098110
I
0.694
POPTR_0014s11780
Populus trichocarpa
POPTR_0014s11780
I
0.684
cassava17115.m1
Manihot esculenta
cassava17115.m1
I
0.682
gene12738-v1.0-hybrid
Fragaria vesca
gene12738-v1.0-hybrid
I
0.681
SapurV1A.0180s0510
Salix purpurea
SapurV1A.0180s0510
I
0.681
Lus10041888.g
Linum usitatissimum
Lus10041888.g
I
0.680
Lus10028435.g
Linum usitatissimum
Lus10028435.g
I
0.680
Cucsa.318610
Cucumis sativus
Cucsa.318610
I
0.679
Cla013211
Citrullus lanatus
Cla013211
I
0.679
Bo2g161180
Brassica oleracea
Bo2g161180
I
0.677
Bra029349
Brassica rapa
Bra029349
I
0.677
evm.TU.supercontig_28.71
Carica papaya
evm.TU.supercontig_28.71
I
0.676
MTR_2g034790
Medicago truncatula
MTR_2g034790
I
0.675
TCM_011660
Theobroma cacao
TCM_011660
I
0.675
Eucgr.G01774
Eucalyptus grandis
Eucgr.G01774
I
0.674
POPTR_0002s19920
Populus trichocarpa
POPTR_0002s19920
I
0.672
BGIOSGA003345
Oryza indica
BGIOSGA003345
I
0.671
OS01G0305900
Oryza sativa
OS01G0305900
I
0.671
ORUFI01G13920
Oryza rufipogon
ORUFI01G13920
I
0.671
OGLUM01G14390
Oryza glumaepatula
OGLUM01G14390
I
0.671
cassava3811.m1
Manihot esculenta
cassava3811.m1
I
0.670
MDP0000119725
Malus domestica
MDP0000119725
I
0.668
MDP0000607330
Malus domestica
MDP0000607330
I
0.668
MTR_4g121460
Medicago truncatula
MTR_4g121460
I
0.666
GLYMA17G03480
Glycine max
GLYMA17G03480
I
0.666
VIT_13s0084g00530
Vitis vinifera
VIT_13s0084g00530
I
0.664
Solyc08g076700.1
Solanum lycopersicum
Solyc08g076700.1
I
0.663
AMTR_s00010p00267100
Amborella trichopoda
AMTR_s00010p00267100
I
0.663
Carubv10020723m.g
Capsella rubella
Carubv10020723m.g
I
0.663
Eucgr.C03554
Eucalyptus grandis
Eucgr.C03554
I
0.663
Bra029350
Brassica rapa
Bra029350
I
0.662
BRADI3G36660
Brachypodium distachyon
BRADI3G36660
I
0.662
SapurV1A.0158s0390
Salix purpurea
SapurV1A.0158s0390
I
0.662
Aquca_073_00013
Aquilegia coerulea
Aquca_073_00013
I
0.661