Thhalv10005564m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10005564m.g T289974_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW

WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.824 0.914
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR

YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.824 0.914
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10005564m Myb 194 240
Thhalv10005564m Myb 246 291

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.880
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.856
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.856
Bra025299 Brassica rapa Bra025299 I 0.847
MYB118 Arabidopsis thaliana AT3G27785 D 0.824
TCM_016909 Theobroma cacao TCM_016909 I 0.811
Bo2g144970 Brassica oleracea Bo2g144970 I 0.808
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.800
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.799
Bra033027 Brassica rapa Bra033027 I 0.784
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.763
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.763
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.761
Pm015681 Prunus mume Pm015681 I 0.752
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.752
Cla010586 Citrullus lanatus Cla010586 I 0.743
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.740
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.736
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.736
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.734
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.731
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.730
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.726
29917.m001977 Ricinus communis 29917.m001977 I 0.726
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.726
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.726
MDP0000199939 Malus domestica MDP0000199939 I 0.722
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.722
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.717
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.717
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.717
Pm024743 Prunus mume Pm024743 I 0.717
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.717
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.714
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.711
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.705
Cla019490 Citrullus lanatus Cla019490 I 0.704
mgf024290m Mimulus guttatus mgf024290m I 0.704
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.703
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.703
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.701
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.695
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.694
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.692
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.692
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.692
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.692
MDP0000215359 Malus domestica MDP0000215359 I 0.692
TCM_012087 Theobroma cacao TCM_012087 I 0.692
30147.m013937 Ricinus communis 30147.m013937 I 0.692
Ca_17294 Cicer arietinum Ca_17294 I 0.691
Ca_17087 Cicer arietinum Ca_17087 I 0.683
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.683
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.681
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.680
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.678
Ca_07482 Cicer arietinum Ca_07482 I 0.678
Ca_19427 Cicer arietinum Ca_19427 I 0.678
MDP0000319656 Malus domestica MDP0000319656 I 0.676
Pm000541 Prunus mume Pm000541 I 0.676
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.676
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.676
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.673
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.672
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.672
Si039046m.g Setaria italica Si039046m.g I 0.672
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.671
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.670
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.669
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.668
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.668
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.667
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.664
AMTR_s00001p00272410 Amborella trichopoda AMTR_s00001p00272410 N 0.662
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.661