Thhalv10007028m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10007028m.g T289982_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT

AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.891 0.978
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.891 0.978
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN

NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.881 0.913
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN

NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.836 0.870
CCA1
M11039_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.836 0.870
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN

NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.818 0.804
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH

DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.818 0.804
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN

NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.818 0.804
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.818 0.804
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN

NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.818 0.804
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.767 0.804
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.767 0.804
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.767 0.804
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.766 0.783
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD

HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.668 0.674
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.668 0.674
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT

AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.668 0.674
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN

NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.665 0.652
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.665 0.652
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.665 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007028m Myb 24 69
Thhalv10007029m Myb 24 69
Thhalv10007100m Myb 24 69

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

327 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30147.m013953 Ricinus communis 30147.m013953 N 0.000
BGIOSGA017070 Oryza indica BGIOSGA017070 N 0.000
BGIOSGA036890 Oryza indica BGIOSGA036890 N 0.000
Bo5g007300 Brassica oleracea Bo5g007300 N 0.000
Bo6g109080 Brassica oleracea Bo6g109080 N 0.000
cassava2660.m1 Manihot esculenta cassava2660.m1 N 0.000
Ciclev10013266m.g Citrus clementina Ciclev10013266m.g N 0.000
F775_52175 Aegilops tauschii F775_52175 N 0.000
GLYMA15G19931 Glycine max GLYMA15G19931 N 0.000
GLYMA16G22488 Glycine max GLYMA16G22488 N 0.000
GLYMA20G11094 Glycine max GLYMA20G11094 N 0.000
GRMZM2G045748 Zea mays GRMZM2G045748 I 0.000
LjSGA_066152.1 Lotus japonicus LjSGA_066152.1 N 0.000
MDP0000891420 Malus domestica MDP0000891420 N 0.000
OLONG_008119 Oryza longistaminata OLONG_008119 N 0.000
orange1.1g037952m.g Citrus sinensis orange1.1g037952m.g N 0.000
ORGLA03G0099100 Oryza glaberrima ORGLA03G0099100 N 0.000
ORGLA05G0203100 Oryza glaberrima ORGLA05G0203100 N 0.000
ORGLA12G0007400 Oryza glaberrima ORGLA12G0007400 N 0.000
ORUFI03G10510 Oryza rufipogon ORUFI03G10510 N 0.000
ORUFI11G18060 Oryza rufipogon ORUFI11G18060 N 0.000
PK21236.1 Cannabis sativa PK21236.1 N 0.000
PRUPE_ppa017959mg Prunus persica PRUPE_ppa017959mg N 0.000
Traes_2AL_962A9D448 Triticum aestivum Traes_2AL_962A9D448 I 0.000
Traes_2BL_35241DE8D Triticum aestivum Traes_2BL_35241DE8D I 0.000
Traes_2BL_7CEC6A8D7 Triticum aestivum Traes_2BL_7CEC6A8D7 I 0.000
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N 0.000
Traes_3AS_7CF26C995 Triticum aestivum Traes_3AS_7CF26C995 N 0.000
Traes_7AS_ED6E0EE34 Triticum aestivum Traes_7AS_ED6E0EE34 N 0.000
TRIUR3_28659 Triticum urartu TRIUR3_28659 N 0.000