Thhalv10008035m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10008035m.g T289989_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN

NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.866 0.891
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH

DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.866 0.891
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN

NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.866 0.891
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.866 0.891
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN

NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.866 0.891
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT

AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.843 0.826
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.843 0.826
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN

NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.815 0.826
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.788 0.804
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN

NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.770 0.739
CCA1
M11039_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.770 0.739
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.728 0.739
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.728 0.739
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.728 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10008035m Myb 50 95

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0002_596 Arabidopsis lyrata Al_scaffold_0002_596 I 0.000
AGL50 Arabidopsis thaliana AT1G59810 D 0.000
Cagra.5017s0002 Capsella grandiflora Cagra.5017s0002 I 0.000
Carubv10022233m.g Capsella rubella Carubv10022233m.g I 0.000
fgenesh1_pg.C_scaffold_2000489 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000489 I 0.000
scaffold_200645.1 Arabidopsis lyrata scaffold_200645.1 I 0.000
Thhalv10023980m.g Eutrema salsugineum Thhalv10023980m.g I 0.000