CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Thhalv10010431m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10010431m.g
T290008_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.778
0.849
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.718
0.796
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY
RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.698
0.753
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.698
0.742
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.698
0.742
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.693
0.720
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.693
0.720
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.693
0.720
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.693
0.742
F3A4.140
M02299_2.00
Arabidopsis thaliana
YAACBGYY
RRCVGTTR
PBM
Weirauch et al.(2014)
pTH7112
0.668
0.710
F3A4.140
M07095_2.00
Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA
Dap-seq
OMalley et al.(2016)
MYB77_col_a
0.668
0.710
F3A4.140
M07096_2.00
Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT
Dap-seq
OMalley et al.(2016)
MYB77_colamp_a
0.668
0.710
F3A4.140
M02701_2.00
Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS
SELEX
Mathelier et al.(2014)
MA0575.1
0.668
0.710
F3A4.140
M11044_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB77_01
0.668
0.710
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10010431m
Myb
51
97
KGPWSTEEDAVLTKLVSKLGPRNWSLIARGIPGRSGKSCRLRWCNQL
Thhalv10010431m
Myb
103
148
RKPFSDEEDRMIISAHAIHGNKWAVIAKMLPGRTDNAIKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
279 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy