CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Thhalv10010576m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10010576m.g
T290011_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAX3
M02700_2.00
Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS
SELEX
Mathelier et al.(2014)
MA0576.1
0.854
0.957
RAX3
M11043_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB84_01
0.854
0.957
MYB80
M07142_2.00
Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MS188_col_a
0.665
0.677
MYB80
M07143_2.00
Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR
Dap-seq
OMalley et al.(2016)
MS188_colamp_a
0.665
0.677
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10010576m
Myb
14
62
KGPWSPEEDAKLKSYIETSGTGGNWIALPHKIGLKRCGKSCRLRWLNYL
Thhalv10010576m
Myb
68
113
HGGFSEEEENIICNFYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRL
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
458 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy