Thhalv10012087m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10012087m.g T290022_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG

CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.741 0.723
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY

RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.720 0.787
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN

NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.720 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10012087m Myb 6 58

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29812.m000204 Ricinus communis 29812.m000204 I 0.748
29912.m005376 Ricinus communis 29912.m005376 I 0.689
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.704
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.689
Aquca_060_00026 Aquilegia coerulea Aquca_060_00026 I 0.694
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.698
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.720
BGIOSGA035841 Oryza indica BGIOSGA035841 I 0.741
Bo3g184590 Brassica oleracea Bo3g184590 I 0.736
Bo5g023860 Brassica oleracea Bo5g023860 I 0.664
Bo6g116150 Brassica oleracea Bo6g116150 I 0.680
Bo8g067280 Brassica oleracea Bo8g067280 I 0.664
Bostr.7128s0053 Boechera stricta Bostr.7128s0053 I 0.669
Bra016037 Brassica rapa Bra016037 I 0.680
Bra016598 Brassica rapa Bra016598 I 0.664
Bra025967 Brassica rapa Bra025967 I 0.664
Bra030894 Brassica rapa Bra030894 I 0.736
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.737
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.781
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.698
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.686
Cagra.1262s0035 Capsella grandiflora Cagra.1262s0035 I 0.663
Carubv10009763m.g Capsella rubella Carubv10009763m.g I 0.663
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.686
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.748
Ca_02232 Cicer arietinum Ca_02232 I 0.741
Ca_02722 Cicer arietinum Ca_02722 I 0.742
Ca_09355 Cicer arietinum Ca_09355 I 0.741
Ca_10058 Cicer arietinum Ca_10058 I 0.737
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.782
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.782
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.689
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.714
Cla006547 Citrullus lanatus Cla006547 I 0.714
Cla014248 Citrullus lanatus Cla014248 I 0.741
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.741
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.714
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.731
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.748
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.775
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I 0.664
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.686
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I 0.697
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.754
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.741
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.741
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.741
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.741
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.741
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.714
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.720
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.698
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.737
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.779
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.779
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.741
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.741
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.779
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.782
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.782
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.741
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.737
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.748
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.711
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.704
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.748
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.704
MDP0000234807 Malus domestica MDP0000234807 I 0.707
MDP0000239354 Malus domestica MDP0000239354 I 0.741
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.781
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.707
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.742
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.741
MTR_5g015340 Medicago truncatula MTR_5g015340 I 0.701
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.687
OB12G25520 Oryza brachyantha OB12G25520 I 0.741
OBART12G18680 Oryza barthii OBART12G18680 I 0.741
OGLUM12G20330 Oryza glumaepatula OGLUM12G20330 I 0.741
OLONG_008332 Oryza longistaminata OLONG_008332 I 0.741
OMERI12G14000 Oryza meridionalis OMERI12G14000 I 0.741
ONIVA12G17630 Oryza nivara ONIVA12G17630 I 0.741
OPUNC12G16890 Oryza punctata OPUNC12G16890 I 0.741
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.714
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.689
ORGLA12G0159400 Oryza glaberrima ORGLA12G0159400 I 0.741
ORUFI12G20880 Oryza rufipogon ORUFI12G20880 I 0.741
OS12G0613300 Oryza sativa OS12G0613300 I 0.741
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.737
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.737
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.748
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.741
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.744
PK06103.1 Cannabis sativa PK06103.1 D 0.741
PK19870.1 Cannabis sativa PK19870.1 I 0.714
Pm002374 Prunus mume Pm002374 I 0.741
Pm021139 Prunus mume Pm021139 I 0.748
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.741
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.748
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.677
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.741
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.748
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.741
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.748
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.737
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.698
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.721
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.721
Si002467m.g Setaria italica Si002467m.g I 0.737
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.737
TCM_007242 Theobroma cacao TCM_007242 I 0.714
Thhalv10011866m.g Eutrema salsugineum Thhalv10011866m.g I 0.727
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.809
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.737
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.737
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.781
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.781
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.769
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.714
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.781
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.714
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.714