CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10014270m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10014270m.g
T290048_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.885
0.978
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.885
0.978
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN
NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.780
0.871
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN
NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.780
0.871
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN
NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.694
0.839
AT2G38090
M07055_2.00
Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD
Dap-seq
OMalley et al.(2016)
At2g38090_col_a
0.685
0.828
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.677
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10014270m
Myb
142
189
GVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
116 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy