CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10014524m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10014524m.g
T290055_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.909
0.989
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.662
0.688
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.662
0.688
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10014524m
Myb
10
57
KGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL
Thhalv10014524m
Myb
63
108
RGKMSPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHM
Thhalv10014615m
Myb
16
36
NIRIGLNRTGKSCRLRWVNYL
Thhalv10014615m
Myb
42
87
RGKMSPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHM
Thhalv10014818m
Myb
1
43
MSPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHM
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
447 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy