Thhalv10018962m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10018962m.g T290093_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN

NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.909 0.989
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH

DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.909 0.989
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN

NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.854 0.903
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH

DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.854 0.903
MYB108
M07065_2.00
Arabidopsis thaliana
RCCWAAYYNNNNHNH

DNDNNNNRRTTWGGY
Dap-seq
OMalley et al.(2016)
BOS1_col_a
0.763 0.839
MYB05_ANTMA
M11067_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.727 0.785
ATMYB121
M07091_2.00
Arabidopsis thaliana
NYNWACCTAMYHHH

DDDRKTAGGTWNRN
Dap-seq
OMalley et al.(2016)
MYB121_col_a
0.716 0.742
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT

ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.704 0.753
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH

DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.704 0.753
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY

RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.704 0.753
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN

NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.702 0.763
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.692 0.667
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN

NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.662 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10018962m Myb 20 67
Thhalv10018962m Myb 73 118

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

673 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Physo127934 Phytophthora sojae Physo127934 N 0.000
Physo128825 Phytophthora sojae Physo128825 N 0.000
Physo129028 Phytophthora sojae Physo129028 N 0.000
Physo131291 Phytophthora sojae Physo131291 N 0.000
Physo137002 Phytophthora sojae Physo137002 N 0.000
Physo137689 Phytophthora sojae Physo137689 N 0.000
Physo139424 Phytophthora sojae Physo139424 N 0.000
Physo141424 Phytophthora sojae Physo141424 N 0.000
Physo142407 Phytophthora sojae Physo142407 N 0.000
Physo145338 Phytophthora sojae Physo145338 N 0.000