CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10028340m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10028340m.g
T290167_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.893
0.989
WER
M11047_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.802
0.946
WER
M11048_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.802
0.946
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10028340m
Myb
14
61
KGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYL
Thhalv10028340m
Myb
67
112
RGTFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MYB23
Arabidopsis thaliana
AT5G40330
D
0.893
Bra025589
Brassica rapa
Bra025589
I
0.893
Cagra.3160s0003
Capsella grandiflora
Cagra.3160s0003
I
0.893
Carubv10005698m.g
Capsella rubella
Carubv10005698m.g
I
0.893
Bostr.7200s0005
Boechera stricta
Bostr.7200s0005
I
0.893
Bo9g165670
Brassica oleracea
Bo9g165670
I
0.819
Bra008740
Brassica rapa
Bra008740
I
0.819
Bostr.1460s0063
Boechera stricta
Bostr.1460s0063
I
0.813
WER
Arabidopsis lyrata
fgenesh2_kg.6__1454__AT5G14750.1
I
0.802
Thhalv10014715m.g
Eutrema salsugineum
Thhalv10014715m.g
I
0.802
Bostr.2902s0211
Boechera stricta
Bostr.2902s0211
I
0.802
Cagra.3166s0078
Capsella grandiflora
Cagra.3166s0078
I
0.802
WER
Arabidopsis thaliana
AT5G14750
D
0.802
Carubv10001990m.g
Capsella rubella
Carubv10001990m.g
I
0.802
Bo2g012170
Brassica oleracea
Bo2g012170
I
0.802
Carubv10018791m.g
Capsella rubella
Carubv10018791m.g
I
0.771
Cagra.4961s0006
Capsella grandiflora
Cagra.4961s0006
I
0.771
Bostr.0556s0467
Boechera stricta
Bostr.0556s0467
I
0.746
Bra025311
Brassica rapa
Bra025311
I
0.739
Bo7g090950
Brassica oleracea
Bo7g090950
I
0.727
GL1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5000559
I
0.725
GL1
Arabidopsis thaliana
AT3G27920
I
0.725
Pm024725
Prunus mume
Pm024725
I
0.724
TCM_016886
Theobroma cacao
TCM_016886
I
0.719
VIT_17s0000g08480
Vitis vinifera
VIT_17s0000g08480
I
0.719
Eucgr.I01791
Eucalyptus grandis
Eucgr.I01791
I
0.718
VIT_14s0066g01220
Vitis vinifera
VIT_14s0066g01220
I
0.716
Bra039065
Brassica rapa
Bra039065
I
0.715
MDP0000578193
Malus domestica
MDP0000578193
I
0.714
cassava26193.m1
Manihot esculenta
cassava26193.m1
I
0.714
Eucgr.J02212
Eucalyptus grandis
Eucgr.J02212
I
0.714
Gorai.007G001800
Gossypium raimondii
Gorai.007G001800
I
0.713
TCM_012057
Theobroma cacao
TCM_012057
I
0.713
SapurV1A.1178s0050
Salix purpurea
SapurV1A.1178s0050
I
0.711
MDP0000199965
Malus domestica
MDP0000199965
I
0.709
TCM_010360
Theobroma cacao
TCM_010360
I
0.709
PRUPE_ppa010908mg
Prunus persica
PRUPE_ppa010908mg
I
0.708
Bra023486
Brassica rapa
Bra023486
I
0.704
Thhalv10005428m.g
Eutrema salsugineum
Thhalv10005428m.g
I
0.700
MDP0000650225
Malus domestica
MDP0000650225
I
0.697
Aquca_025_00333
Aquilegia coerulea
Aquca_025_00333
I
0.690
POPTR_0012s08190
Populus trichocarpa
POPTR_0012s08190
I
0.689
Gorai.004G150800
Gossypium raimondii
Gorai.004G150800
I
0.687
cassava27350.m1
Manihot esculenta
cassava27350.m1
I
0.687
Aquca_002_00170
Aquilegia coerulea
Aquca_002_00170
I
0.686
evm.TU.supercontig_124.57
Carica papaya
evm.TU.supercontig_124.57
I
0.685
LjT16O05.150.nd
Lotus japonicus
LjT16O05.150.nd
I
0.682
SapurV1A.1404s0020
Salix purpurea
SapurV1A.1404s0020
I
0.678
Eucgr.B00373
Eucalyptus grandis
Eucgr.B00373
I
0.676
AMTR_s00024p00224470
Amborella trichopoda
AMTR_s00024p00224470
I
0.676
MDP0000537324
Malus domestica
MDP0000537324
I
0.674
AMTR_s00024p00224180
Amborella trichopoda
AMTR_s00024p00224180
I
0.673
Gorai.012G061800
Gossypium raimondii
Gorai.012G061800
I
0.672
Cla011528
Citrullus lanatus
Cla011528
I
0.672
PK01088.1
Cannabis sativa
PK01088.1
I
0.672
POPTR_0015s08680
Populus trichocarpa
POPTR_0015s08680
I
0.671
VIT_01s0127g00730
Vitis vinifera
VIT_01s0127g00730
I
0.669
MDP0000264051
Malus domestica
MDP0000264051
I
0.667
PRUPE_ppa014884mg
Prunus persica
PRUPE_ppa014884mg
I
0.666
MDP0000164048
Malus domestica
MDP0000164048
I
0.666
cassava32672.m1
Manihot esculenta
cassava32672.m1
I
0.666
Pm006678
Prunus mume
Pm006678
I
0.666
mgf023205m
Mimulus guttatus
mgf023205m
I
0.665
Ciclev10017556m.g
Citrus clementina
Ciclev10017556m.g
I
0.664
Eucgr.E01031
Eucalyptus grandis
Eucgr.E01031
I
0.664
PDK_20s1554342g001
Phoenix dactylifera
PDK_20s1554342g001
I
0.664
Ciclev10032713m.g
Citrus clementina
Ciclev10032713m.g
I
0.663
orange1.1g047269m.g
Citrus sinensis
orange1.1g047269m.g
I
0.663
Eucgr.C01374
Eucalyptus grandis
Eucgr.C01374
I
0.663
gene31098-v1.0-hybrid
Fragaria vesca
gene31098-v1.0-hybrid
I
0.661