Thhalv10028340m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10028340m.g T290167_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH

DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.893 0.989
WER
M11047_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.802 0.946
WER
M11048_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.802 0.946
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028340m Myb 14 61
Thhalv10028340m Myb 67 112

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB23 Arabidopsis thaliana AT5G40330 D 0.893
Bra025589 Brassica rapa Bra025589 I 0.893
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.893
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.893
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.893
Bo9g165670 Brassica oleracea Bo9g165670 I 0.819
Bra008740 Brassica rapa Bra008740 I 0.819
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I 0.813
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.802
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.802
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.802
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.802
WER Arabidopsis thaliana AT5G14750 D 0.802
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.802
Bo2g012170 Brassica oleracea Bo2g012170 I 0.802
Carubv10018791m.g Capsella rubella Carubv10018791m.g I 0.771
Cagra.4961s0006 Capsella grandiflora Cagra.4961s0006 I 0.771
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I 0.746
Bra025311 Brassica rapa Bra025311 I 0.739
Bo7g090950 Brassica oleracea Bo7g090950 I 0.727
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I 0.725
GL1 Arabidopsis thaliana AT3G27920 I 0.725
Pm024725 Prunus mume Pm024725 I 0.724
TCM_016886 Theobroma cacao TCM_016886 I 0.719
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.719
Eucgr.I01791 Eucalyptus grandis Eucgr.I01791 I 0.718
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.716
Bra039065 Brassica rapa Bra039065 I 0.715
MDP0000578193 Malus domestica MDP0000578193 I 0.714
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.714
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.714
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.713
TCM_012057 Theobroma cacao TCM_012057 I 0.713
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.711
MDP0000199965 Malus domestica MDP0000199965 I 0.709
TCM_010360 Theobroma cacao TCM_010360 I 0.709
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.708
Bra023486 Brassica rapa Bra023486 I 0.704
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.700
MDP0000650225 Malus domestica MDP0000650225 I 0.697
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.690
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.689
Gorai.004G150800 Gossypium raimondii Gorai.004G150800 I 0.687
cassava27350.m1 Manihot esculenta cassava27350.m1 I 0.687
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.686
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.685
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I 0.682
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.678
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.676
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I 0.676
MDP0000537324 Malus domestica MDP0000537324 I 0.674
AMTR_s00024p00224180 Amborella trichopoda AMTR_s00024p00224180 I 0.673
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.672
Cla011528 Citrullus lanatus Cla011528 I 0.672
PK01088.1 Cannabis sativa PK01088.1 I 0.672
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.671
VIT_01s0127g00730 Vitis vinifera VIT_01s0127g00730 I 0.669
MDP0000264051 Malus domestica MDP0000264051 I 0.667
PRUPE_ppa014884mg Prunus persica PRUPE_ppa014884mg I 0.666
MDP0000164048 Malus domestica MDP0000164048 I 0.666
cassava32672.m1 Manihot esculenta cassava32672.m1 I 0.666
Pm006678 Prunus mume Pm006678 I 0.666
mgf023205m Mimulus guttatus mgf023205m I 0.665
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I 0.664
Eucgr.E01031 Eucalyptus grandis Eucgr.E01031 I 0.664
PDK_20s1554342g001 Phoenix dactylifera PDK_20s1554342g001 I 0.664
Ciclev10032713m.g Citrus clementina Ciclev10032713m.g I 0.663
orange1.1g047269m.g Citrus sinensis orange1.1g047269m.g I 0.663
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I 0.663
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.661