PK19621.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK19621.1 T290438_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19621.1
M01280_2.00		 Cannabis sativa
NNTTATCYN
NRGATAANN		 PBM
Lambert et al.(2019)
pTH10140		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.712 0.815
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.712 0.815
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.712 0.815
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01280_2.00 Myb 160 205

DNA Binding Domains

Protein ID Domain From To Sequence
PK19621.1 Myb 160 205

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.743
Pm030197 Prunus mume Pm030197 I 0.743
TCM_012262 Theobroma cacao TCM_012262 I 0.726
Ca_06612 Cicer arietinum Ca_06612 I 0.721
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.718
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.716
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.713
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.713
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.712
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.708
30174.m008717 Ricinus communis 30174.m008717 I 0.707
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.706
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.706
MDP0000853568 Malus domestica MDP0000853568 I 0.699
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.693
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.693
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.693
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.691
Bo6g018000 Brassica oleracea Bo6g018000 I 0.688
Bra018772 Brassica rapa Bra018772 I 0.688
Cucsa.198920 Cucumis sativus Cucsa.198920 I 0.687
Cla019277 Citrullus lanatus Cla019277 I 0.687
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.687
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.687
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.678
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.678
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.667