PK29171.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK29171.1 T290496_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATY53
M07078_2.00
Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN

NNNNNNNNDDHGKTWGGTRVR
Dap-seq
OMalley et al.(2016)
MYB67_col_a
0.713 0.880
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK29171.1 Myb 2 39
PK29171.1 Myb 45 90

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_030_00294 Aquilegia coerulea Aquca_030_00294 I 0.709
ATY53 Arabidopsis lyrata scaffold_301452.1 I 0.698
ATY53 Arabidopsis thaliana AT3G12720 D 0.713
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I 0.713
Bo5g133210 Brassica oleracea Bo5g133210 I 0.689
Bo1g138990 Brassica oleracea Bo1g138990 I 0.683
Bra039339 Brassica rapa Bra039339 I 0.683
Bra034738 Brassica rapa Bra034738 I 0.689
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I 0.713
Carubv10015099m.g Capsella rubella Carubv10015099m.g I 0.713
Ciclev10006752m.g Citrus clementina Ciclev10006752m.g I 0.718
Ciclev10018009m.g Citrus clementina Ciclev10018009m.g I 0.706
orange1.1g036087m.g Citrus sinensis orange1.1g036087m.g I 0.718
orange1.1g039070m.g Citrus sinensis orange1.1g039070m.g I 0.706
Eucgr.E04323 Eucalyptus grandis Eucgr.E04323 I 0.686
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I 0.665
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I 0.689
gene19715-v1.0-hybrid Fragaria vesca gene19715-v1.0-hybrid I 0.666
GLYMA08G17371 Glycine max GLYMA08G17371 I 0.691
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.667
Gorai.004G268300 Gossypium raimondii Gorai.004G268300 I 0.747
MDP0000226667 Malus domestica MDP0000226667 I 0.696
MDP0000157506 Malus domestica MDP0000157506 I 0.706
cassava44228.m1 Manihot esculenta cassava44228.m1 I 0.718
cassava33147.m1 Manihot esculenta cassava33147.m1 I 0.747
cassava11527.m1 Manihot esculenta cassava11527.m1 I 0.667
MTR_8g017540 Medicago truncatula MTR_8g017540 I 0.664
MTR_2g064160 Medicago truncatula MTR_2g064160 I 0.676
GSMUA_Achr8G03510_001 Musa acuminata GSMUA_Achr8G03510_001 I 0.667
POPTR_0003s15440 Populus trichocarpa POPTR_0003s15440 I 0.662
POPTR_0008s08110 Populus trichocarpa POPTR_0008s08110 I 0.681
Pm010847 Prunus mume Pm010847 I 0.706
Pm010927 Prunus mume Pm010927 I 0.738
PRUPE_ppa026618mg Prunus persica PRUPE_ppa026618mg I 0.706
PRUPE_ppa022859mg Prunus persica PRUPE_ppa022859mg I 0.674
30125.m001257 Ricinus communis 30125.m001257 I 0.710
27956.m000359 Ricinus communis 27956.m000359 I 0.684
SapurV1A.4138s0010 Salix purpurea SapurV1A.4138s0010 I 0.711
SapurV1A.0149s0490 Salix purpurea SapurV1A.0149s0490 I 0.711
SapurV1A.0122s0490 Salix purpurea SapurV1A.0122s0490 I 0.684
Solyc10g005240.2 Solanum lycopersicum Solyc10g005240.2 I 0.688
Solyc02g082040.2 Solanum lycopersicum Solyc02g082040.2 I 0.715
PGSC0003DMG400007325 Solanum tuberosum PGSC0003DMG400007325 I 0.670
TCM_033645 Theobroma cacao TCM_033645 I 0.717
TCM_005977 Theobroma cacao TCM_005977 I 0.709
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I 0.676
ATY53 Vitis vinifera VIT_19s0085g00940 I 0.671