CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
chr1.LjT14I13.140.nd
(
Lotus japonicus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
chr1.LjT14I13.140.nd
T290668_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ASR3
M07053_2.00
Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH
Dap-seq
OMalley et al.(2016)
AT2G33550_col_a
0.758
0.891
ASR3
M07054_2.00
Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN
Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a
0.758
0.891
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr1.LjT14I13.140.nd
Myb
41
106
PRWTRQEILVLIQGKADAESRFKPGRAAGSAFGSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLA
Links
Other
Myb/SANT
family TFs
Other
Lotus japonicus
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy