CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
chr2.CM0405.380.nd
(
Lotus japonicus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
chr2.CM0405.380.nd
T290685_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.689
0.774
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY
RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.684
0.753
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.684
0.753
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.670
0.731
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.670
0.731
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr2.CM0405.380.nd
Myb
13
60
KGAWSKQEDQKLIDHIRVHGEGSWRSIPKAAGLYRCGKSCRLRWLNYL
chr2.CM0405.380.nd
Myb
66
111
RGIFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHI
Links
Other
Myb/SANT
family TFs
Other
Lotus japonicus
TFs
373 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy