chr4.LjB15O07.50.nc (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 chr4.LjB15O07.50.nc T290721_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G49010
M01269_2.00
Arabidopsis thaliana
NNYWATCNN

NNGATWRNN
PBM
Lambert et al.(2019)
pTH11535
0.709 0.811
AT1G49010
M07022_2.00
Arabidopsis thaliana
NHHWWYCTTATCYWH

DWRGATAAGRWWDDN
Dap-seq
OMalley et al.(2016)
At1g49010_col_a
0.709 0.811
AT1G49010
M07023_2.00
Arabidopsis thaliana
WWYCTTATCYWHWHH

DDWDWRGATAAGRWW
Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a
0.709 0.811
PK19621.1
M01280_2.00
Cannabis sativa
NNTTATCYN

NRGATAANN
PBM
Lambert et al.(2019)
pTH10140
0.706 0.844
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.LjB15O07.50.nc Myb 136 181

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AC194965.4_FG004 Zea mays AC194965.4_FG004 N 0.000
Bra009926 Brassica rapa Bra009926 N 0.000
BRADI2G12590 Brachypodium distachyon BRADI2G12590 N 0.000
BRADI2G35057 Brachypodium distachyon BRADI2G35057 N 0.000
cassava16506.m1 Manihot esculenta cassava16506.m1 N 0.000
Eucgr.H01071 Eucalyptus grandis Eucgr.H01071 N 0.000
GATA23 Arabidopsis thaliana AT5G26930 N 0.000
GRMZM2G052616 Zea mays GRMZM2G052616 N 0.000
GRMZM2G104390 Zea mays GRMZM2G104390 N 0.000
LPERR01G13070 Leersia perrieri LPERR01G13070 N 0.000
OB01G24090 Oryza brachyantha OB01G24090 N 0.000
OB05G13650 Oryza brachyantha OB05G13650 N 0.000
OBART01G14380 Oryza barthii OBART01G14380 N 0.000
OBART05G03900 Oryza barthii OBART05G03900 N 0.000
OGLUM01G16180 Oryza glumaepatula OGLUM01G16180 N 0.000
OLONG_020882 Oryza longistaminata OLONG_020882 N 0.000
ONIVA04G04160 Oryza nivara ONIVA04G04160 N 0.000
OPUNC01G14080 Oryza punctata OPUNC01G14080 N 0.000
OPUNC05G03600 Oryza punctata OPUNC05G03600 N 0.000
ORGLA01G0118700 Oryza glaberrima ORGLA01G0118700 N 0.000
ORGLA05G0036200 Oryza glaberrima ORGLA05G0036200 N 0.000
ORUFI01G16060 Oryza rufipogon ORUFI01G16060 N 0.000
OS01G0343300 Oryza sativa OS01G0343300 N 0.000
OS05G0155400 Oryza sativa OS05G0155400 N 0.000
Pavir.Ea01306 Panicum virgatum Pavir.Ea01306 N 0.000
Pavir.Eb02364 Panicum virgatum Pavir.Eb02364 N 0.000
Pavir.J31164 Panicum virgatum Pavir.J31164 N 0.000
Pavir.J34225 Panicum virgatum Pavir.J34225 N 0.000
Sb03g013700 Sorghum bicolor Sb03g013700 N 0.000
Sb09g004315 Sorghum bicolor Sb09g004315 N 0.000
Si004417m.g Setaria italica Si004417m.g N 0.000
Si011269m.g Setaria italica Si011269m.g N 0.000