chr4.LjB15O07.50.nc (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 chr4.LjB15O07.50.nc T290721_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G49010
M01269_2.00
Arabidopsis thaliana
NNYWATCNN

NNGATWRNN
PBM
Lambert et al.(2019)
pTH11535
0.709 0.811
AT1G49010
M07022_2.00
Arabidopsis thaliana
NHHWWYCTTATCYWH

DWRGATAAGRWWDDN
Dap-seq
OMalley et al.(2016)
At1g49010_col_a
0.709 0.811
AT1G49010
M07023_2.00
Arabidopsis thaliana
WWYCTTATCYWHWHH

DDWDWRGATAAGRWW
Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a
0.709 0.811
PK19621.1
M01280_2.00
Cannabis sativa
NNTTATCYN

NRGATAANN
PBM
Lambert et al.(2019)
pTH10140
0.706 0.844
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.LjB15O07.50.nc Myb 136 181

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.714
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.709
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.704
Bo00685s060 Brassica oleracea Bo00685s060 I 0.662
PK19621.1 Cannabis sativa PK19621.1 D 0.706
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.676
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.676
Ca_06612 Cicer arietinum Ca_06612 I 0.808
Cla019277 Citrullus lanatus Cla019277 I 0.677
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.734
Cucsa.198920 Cucumis sativus Cucsa.198920 I 0.677
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.697
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.735
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.680
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.809
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.829
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.730
MDP0000241185 Malus domestica MDP0000241185 N 0.686
MDP0000853568 Malus domestica MDP0000853568 I 0.735
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.815
mgf017230m Mimulus guttatus mgf017230m N 0.668
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.703
Pm030197 Prunus mume Pm030197 I 0.779
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.779
30174.m008717 Ricinus communis 30174.m008717 I 0.699
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.727
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.680
TCM_012262 Theobroma cacao TCM_012262 I 0.750
VIT_17s0000g04130 Vitis vinifera VIT_17s0000g04130 I 0.688