CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chr5.CM0239.580.nc
(
Lotus japonicus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
chr5.CM0239.580.nc
T290732_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.782
0.871
PK06182.1
M02349_2.00
Cannabis sativa
WTACCTACCN
NGGTAGGTAW
PBM
Weirauch et al.(2014)
pTH9581
0.773
0.871
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr5.CM0239.580.nc
Myb
14
61
RGRWTAEEDEILLKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL
chr5.CM0239.580.nc
Myb
67
112
RGNISAQEEDTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHL
Links
Other
Myb/SANT
family TFs
Other
Lotus japonicus
TFs
253 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy