chr6.CM0114.280.nc (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 chr6.CM0114.280.nc T290740_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.668 0.674
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.668 0.674
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.668 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr6.CM0114.280.nc Myb 19 65

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_029436.1 Lotus japonicus LjSGA_029436.1 N 0.785
MTR_5g088010 Medicago truncatula MTR_5g088010 N 0.749
Solyc07g026680.2 Solanum lycopersicum Solyc07g026680.2 I 0.714
PGSC0003DMG400009570 Solanum tuberosum PGSC0003DMG400009570 I 0.714
MTR_5g027570 Medicago truncatula MTR_5g027570 N 0.699
Lus10040225.g Linum usitatissimum Lus10040225.g I 0.690
Bostr.7128s0505 Boechera stricta Bostr.7128s0505 I 0.690
Bra016530 Brassica rapa Bra016530 I 0.690
Thhalv10008346m.g Eutrema salsugineum Thhalv10008346m.g I 0.690
Bo1g113580 Brassica oleracea Bo1g113580 I 0.683
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.679
Traes_3AS_4DF357170 Triticum aestivum Traes_3AS_4DF357170 I 0.675
Solyc12g008800.1 Solanum lycopersicum Solyc12g008800.1 I 0.675
Sb03g003100 Sorghum bicolor Sb03g003100 I 0.675
TRAES3BF096900180CFD_g Triticum aestivum TRAES3BF096900180CFD_g I 0.675
Si002353m.g Setaria italica Si002353m.g I 0.675
BRADI2G05760 Brachypodium distachyon BRADI2G05760 I 0.675
GRMZM2G049695 Zea mays GRMZM2G049695 I 0.675
SapurV1A.0161s0200 Salix purpurea SapurV1A.0161s0200 I 0.675
Pavir.Ea00361 Panicum virgatum Pavir.Ea00361 I 0.675
PGSC0003DMG400000340 Solanum tuberosum PGSC0003DMG400000340 I 0.675
MLOC_70777 Hordeum vulgare MLOC_70777 I 0.675
TRIUR3_35146 Triticum urartu TRIUR3_35146 I 0.675
F775_13323 Aegilops tauschii F775_13323 I 0.675
SELMODRAFT_84280 Selaginella moellendorffii SELMODRAFT_84280 I 0.674
POPTR_0015s08020 Populus trichocarpa POPTR_0015s08020 I 0.673
MDP0000233793 Malus domestica MDP0000233793 I 0.672
Carubv10011841m.g Capsella rubella Carubv10011841m.g I 0.668
Cagra.1961s0096 Capsella grandiflora Cagra.1961s0096 I 0.668
fgenesh2_kg.1__2077__AT1G19000.2 Arabidopsis lyrata fgenesh2_kg.1__2077__AT1G19000.2 I 0.668
AT1G19000 Arabidopsis thaliana AT1G19000 D 0.668
MTR_5g088060 Medicago truncatula MTR_5g088060 I 0.666
Thhalv10014394m.g Eutrema salsugineum Thhalv10014394m.g I 0.666
MTR_5g488160 Medicago truncatula MTR_5g488160 I 0.666
Lus10004248.g Linum usitatissimum Lus10004248.g I 0.665
evm.TU.supercontig_35.12 Carica papaya evm.TU.supercontig_35.12 I 0.665
Eucgr.F03075 Eucalyptus grandis Eucgr.F03075 I 0.665
Sb03g006450 Sorghum bicolor Sb03g006450 I 0.665
PGSC0003DMG400024572 Solanum tuberosum PGSC0003DMG400024572 I 0.665
LPERR10G14380 Leersia perrieri LPERR10G14380 I 0.663
OPUNC10G16890 Oryza punctata OPUNC10G16890 I 0.663
GRMZM5G813892 Zea mays GRMZM5G813892 I 0.663
MYBS3 Oryza sativa OS10G0561400 I 0.663
BRADI3G33400 Brachypodium distachyon BRADI3G33400 I 0.663
ORGLA10G0136800 Oryza glaberrima ORGLA10G0136800 I 0.663
GRMZM2G034110 Zea mays GRMZM2G034110 I 0.663
Pavir.Ia02215 Panicum virgatum Pavir.Ia02215 I 0.663
Pavir.Ib02319 Panicum virgatum Pavir.Ib02319 I 0.663
Sb01g029020 Sorghum bicolor Sb01g029020 I 0.663
MLOC_10528 Hordeum vulgare MLOC_10528 I 0.663
OGLUM10G18630 Oryza glumaepatula OGLUM10G18630 I 0.663
OBART10G18550 Oryza barthii OBART10G18550 I 0.663
Si036696m.g Setaria italica Si036696m.g I 0.663
OLONG_012642 Oryza longistaminata OLONG_012642 I 0.663
OMERI08G00440 Oryza meridionalis OMERI08G00440 I 0.663
Traes_1AL_297FBF3A3 Triticum aestivum Traes_1AL_297FBF3A3 I 0.663
Traes_1BL_B7F04D24D Triticum aestivum Traes_1BL_B7F04D24D I 0.663
TRIUR3_06499 Triticum urartu TRIUR3_06499 I 0.663
ONIVA10G21060 Oryza nivara ONIVA10G21060 I 0.663
ORUFI10G19730 Oryza rufipogon ORUFI10G19730 I 0.663
OB10G25650 Oryza brachyantha OB10G25650 I 0.663
Traes_1DL_8398893D8 Triticum aestivum Traes_1DL_8398893D8 I 0.663
Cucsa.395160 Cucumis sativus Cucsa.395160 I 0.662