LjSGA_026563.1 (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 LjSGA_026563.1 T290951_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB46
M00877_2.00
Arabidopsis thaliana
NAMCNDHHN

NDDHNGKTN
PBM
Franco-Zorrilla et al.(2014)
MYB46
0.737 0.889
MYB46
M11046_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB46_Q6
0.737 0.889
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC

GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.727 0.877
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH

DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.727 0.877
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN

NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.727 0.877
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH

DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.666 0.728
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH

DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.666 0.728
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_026563.1 Myb 1 36
LjSGA_026563.1 Myb 42 87

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

Invalid Input OrderBy

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action