NAC054 (Arabidopsis thaliana)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 AT3G15170 T292068_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC054
M07205_2.00		 Arabidopsis thaliana
CKTVHNNHRCACGYHANCW
WGNTDRCGTGYDNNDBAMG		 Dap-seq
OMalley et al.(2016)
CUC1_colamp_a		 (Direct) (Direct)
NAC054
M07206_2.00		 Arabidopsis thaliana
TWNCKTGHNNNDCAMG
CKTGHNNNDCAMGNWA		 Dap-seq
OMalley et al.(2016)
CUC1_col_v31		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC100
M02375_2.00 		Arabidopsis thaliana
NBAMKNHWNN
NNWDNMKTVN		 PBM
Weirauch et al.(2014)
pTH7239 		0.905 0.807
NAC079
M02373_2.00 		Arabidopsis thaliana
TTGCGTRY
RYACGCAA		 PBM
Weirauch et al.(2014)
pTH7399 		0.905 0.789
NAC079
M07228_2.00 		Arabidopsis thaliana
CBWNHNNHACACGYWA
TWRCGTGTDNNDNWVG		 Dap-seq
OMalley et al.(2016)
ANAC079_colamp_a 		0.905 0.789
NAC079
M07229_2.00 		Arabidopsis thaliana
NTWNCKTVHNNHWCAMGYWAH
DTWRCKTGWDNNDBAMGNWAN		 Dap-seq
OMalley et al.(2016)
ANAC079_col 		0.905 0.789
ANAC080
M02376_2.00 		Arabidopsis lyrata
NBAMKNHWNN
NNWDNMKTVN		 PBM
Weirauch et al.(2014)
pTH9230 		0.903 0.789
NAC098
M07239_2.00 		Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG		 Dap-seq
OMalley et al.(2016)
CUC2_colamp_a 		0.902 0.842
NAC098
M07240_2.00 		Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN		 Dap-seq
OMalley et al.(2016)
CUC2_col 		0.902 0.842
NAC59
M11080_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC059_01 		0.902 0.781
NAC92
M00979_2.00 		Arabidopsis thaliana
NNDYACGBHA
TDVCGTRHNN		 PBM
Lindemose et al.(2014)
ANAC092 		0.900 0.789
NAC92
M00730_2.00 		Arabidopsis thaliana
DYACGNHAN
NTDNCGTRH		 PBM
Chang et al.(2013)
pTH7335 		0.900 0.789
NAC92
M07234_2.00 		Arabidopsis thaliana
TWNCKTGHNNHDCAMGYWAY
RTWRCKTGHDNNDCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC092_colamp_a 		0.900 0.789
NAC92
M07235_2.00 		Arabidopsis thaliana
WRCKTGTNNNDCAMG
CKTGHNNNACAMGYW		 Dap-seq
OMalley et al.(2016)
ANAC092_col_v3a 		0.900 0.789
ANAC100
M02377_2.00 		Arabidopsis lyrata
DYACGYHANN
NNTDRCGTRH		 PBM
Weirauch et al.(2014)
pTH9234 		0.899 0.807
e_gw1.288.15.1
M02381_2.00 		Physcomitrella patens
NNNBAMKNHW
WDNMKTVNNN		 PBM
Weirauch et al.(2014)
pTH8467 		0.881 0.781
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G15170.1 NAC/NAM 21 147

Links

Other NAC/NAM family TFs
Other Arabidopsis thaliana TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra021592 Brassica rapa Bra021592 I 0.969
Bo3g066690 Brassica oleracea Bo3g066690 I 0.969
Bo1g129730 Brassica oleracea Bo1g129730 I 0.969
Bostr.28625s0180 Boechera stricta Bostr.28625s0180 I 0.969
Cagra.0007s0060 Capsella grandiflora Cagra.0007s0060 I 0.969
Thhalv10021186m.g Eutrema salsugineum Thhalv10021186m.g I 0.969
CUC1 Arabidopsis lyrata fgenesh2_kg.3__1650__AT3G15170.1 I 0.969
Carubv10014276m.g Capsella rubella Carubv10014276m.g I 0.969
Bra001586 Brassica rapa Bra001586 I 0.969
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I 0.943
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I 0.942
GLYMA12G35530 Glycine max GLYMA12G35530 I 0.941
GLYMA13G34950 Glycine max GLYMA13G34950 I 0.941
VIT_19s0014g02200 Vitis vinifera VIT_19s0014g02200 I 0.938
Ca_22532 Cicer arietinum Ca_22532 I 0.937
MTR_2g078700 Medicago truncatula MTR_2g078700 I 0.937
VIT_17s0000g06400 Vitis vinifera VIT_17s0000g06400 I 0.937
LjSGA_071377.1 Lotus japonicus LjSGA_071377.1 I 0.936
GLYMA06G35660 Glycine max GLYMA06G35660 I 0.935
GLYMA12G26190 Glycine max GLYMA12G26190 I 0.935
Cla023717 Citrullus lanatus Cla023717 I 0.934
Cucsa.122890 Cucumis sativus Cucsa.122890 I 0.933
chr3.CM0282.730.nc Lotus japonicus chr3.CM0282.730.nc I 0.929
mgf003818m Mimulus guttatus mgf003818m I 0.925
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I 0.924
PK13860.1 Cannabis sativa PK13860.1 I 0.924
VIT_14s0108g01070 Vitis vinifera VIT_14s0108g01070 I 0.924
Pm015914 Prunus mume Pm015914 I 0.923
Cla018878 Citrullus lanatus Cla018878 I 0.923
AMTR_s00058p00136280 Amborella trichopoda AMTR_s00058p00136280 I 0.922
POPTR_0001s40680 Populus trichocarpa POPTR_0001s40680 I 0.922
SapurV1A.0207s0120 Salix purpurea SapurV1A.0207s0120 I 0.922
TCM_018621 Theobroma cacao TCM_018621 I 0.921
PRUPE_ppa007653mg Prunus persica PRUPE_ppa007653mg I 0.919
27950.m000105 Ricinus communis 27950.m000105 I 0.919
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I 0.919
Lus10041924.g Linum usitatissimum Lus10041924.g I 0.919
Lus10005537.g Linum usitatissimum Lus10005537.g I 0.919
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I 0.919
MDP0000911724 Malus domestica MDP0000911724 I 0.919
TCM_031619 Theobroma cacao TCM_031619 I 0.919
Solyc02g088180.2 Solanum lycopersicum Solyc02g088180.2 I 0.917
GSMUA_Achr10G22350_001 Musa acuminata GSMUA_Achr10G22350_001 I 0.917
PGSC0003DMG400001338 Solanum tuberosum PGSC0003DMG400001338 I 0.917
MDP0000276765 Malus domestica MDP0000276765 I 0.916
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I 0.915
Pm011397 Prunus mume Pm011397 I 0.915
cassava44869.m1 Manihot esculenta cassava44869.m1 I 0.915
MDP0000310981 Malus domestica MDP0000310981 I 0.915
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.915
Pm024887 Prunus mume Pm024887 I 0.914
PK26741.1 Cannabis sativa PK26741.1 I 0.914
Eucgr.B00529 Eucalyptus grandis Eucgr.B00529 I 0.914
PK23488.1 Cannabis sativa PK23488.1 I 0.912
mgf023988m Mimulus guttatus mgf023988m I 0.912
GLYMA06G21020 Glycine max GLYMA06G21020 I 0.911
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I 0.911
gene26043-v1.0-hybrid Fragaria vesca gene26043-v1.0-hybrid I 0.911
gene22522-v1.0-hybrid Fragaria vesca gene22522-v1.0-hybrid I 0.911
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.910
evm.TU.supercontig_14.101 Carica papaya evm.TU.supercontig_14.101 I 0.910
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.910
Gorai.007G079900 Gossypium raimondii Gorai.007G079900 I 0.910
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.910
Ca_11021 Cicer arietinum Ca_11021 I 0.910
GLYMA05G00930 Glycine max GLYMA05G00930 I 0.910
GLYMA17G10970 Glycine max GLYMA17G10970 I 0.910
Bo2g043280 Brassica oleracea Bo2g043280 I 0.909
Gorai.008G194400 Gossypium raimondii Gorai.008G194400 I 0.909
Bra022685 Brassica rapa Bra022685 I 0.909
TCM_014073 Theobroma cacao TCM_014073 I 0.909
GRMZM2G386163 Zea mays GRMZM2G386163 I 0.908
Bo00578s090 Brassica oleracea Bo00578s090 I 0.908
Bra025658 Brassica rapa Bra025658 I 0.908
evm.TU.supercontig_111.22 Carica papaya evm.TU.supercontig_111.22 I 0.907
OPUNC09G13640 Oryza punctata OPUNC09G13640 I 0.907
GRMZM2G008374 Zea mays GRMZM2G008374 I 0.907
OS09G0497900 Oryza sativa OS09G0497900 I 0.907
ONIVA09G15800 Oryza nivara ONIVA09G15800 I 0.907
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I 0.907
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I 0.907
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I 0.907
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I 0.907
BGIOSGA029508 Oryza indica BGIOSGA029508 I 0.907
OLONG_009674 Oryza longistaminata OLONG_009674 I 0.907
OBART09G15220 Oryza barthii OBART09G15220 I 0.907
OMERI07G04410 Oryza meridionalis OMERI07G04410 I 0.907
LPERR09G11330 Leersia perrieri LPERR09G11330 I 0.907
Sb02g028870 Sorghum bicolor Sb02g028870 I 0.906
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.906
Si030187m.g Setaria italica Si030187m.g I 0.906
Bostr.13129s0198 Boechera stricta Bostr.13129s0198 I 0.906
mgf017639m Mimulus guttatus mgf017639m I 0.906
LPERR06G12840 Leersia perrieri LPERR06G12840 I 0.906
Bo9g113820 Brassica oleracea Bo9g113820 I 0.906
Pavir.J02772 Panicum virgatum Pavir.J02772 I 0.906
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.906
GLYMA19G02850 Glycine max GLYMA19G02850 I 0.905
Carubv10001372m.g Capsella rubella Carubv10001372m.g I 0.905
GLYMA04G33270 Glycine max GLYMA04G33270 I 0.905
chr4.CM0087.800.nd Lotus japonicus chr4.CM0087.800.nd I 0.905
F775_52293 Aegilops tauschii F775_52293 I 0.905
NAC100 Arabidopsis thaliana AT5G61430 D 0.905
NAC079 Arabidopsis thaliana AT5G07680 D 0.905
MDP0000135860 Malus domestica MDP0000135860 I 0.905
Cagra.2925s0018 Capsella grandiflora Cagra.2925s0018 I 0.905
TRIUR3_20591 Triticum urartu TRIUR3_20591 I 0.905
ONIVA03G33370 Oryza nivara ONIVA03G33370 I 0.905
OLONG_019251 Oryza longistaminata OLONG_019251 I 0.905
Thhalv10014081m.g Eutrema salsugineum Thhalv10014081m.g I 0.905
OS06G0344900 Oryza sativa OS06G0344900 I 0.905
OB06G22100 Oryza brachyantha OB06G22100 I 0.905
BGIOSGA022861 Oryza indica BGIOSGA022861 I 0.905
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I 0.905
OBART06G13940 Oryza barthii OBART06G13940 I 0.905
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I 0.905
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I 0.905
MLOC_68185 Hordeum vulgare MLOC_68185 I 0.905
OPUNC06G13130 Oryza punctata OPUNC06G13130 I 0.905
MTR_3g435150 Medicago truncatula MTR_3g435150 I 0.904
Bra009246 Brassica rapa Bra009246 I 0.904
PDK_20s1323531g003 Phoenix dactylifera PDK_20s1323531g003 I 0.904
ANAC080 Arabidopsis lyrata fgenesh2_kg.6__736__AT5G07680.1 D 0.903
Cucsa.112890 Cucumis sativus Cucsa.112890 I 0.903
Gorai.013G171300 Gossypium raimondii Gorai.013G171300 I 0.903
orange1.1g047710m.g Citrus sinensis orange1.1g047710m.g I 0.903
Ciclev10008619m.g Citrus clementina Ciclev10008619m.g I 0.903
MTR_4g108760 Medicago truncatula MTR_4g108760 I 0.903
NAC59 Arabidopsis thaliana AT3G29035 D 0.902
Thhalv10004550m.g Eutrema salsugineum Thhalv10004550m.g I 0.902
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.902
NAC098 Arabidopsis thaliana AT5G53950 D 0.902
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.902
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.902
Aquca_002_00662 Aquilegia coerulea Aquca_002_00662 I 0.902
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.902
MDP0000184069 Malus domestica MDP0000184069 I 0.901
Bostr.10058s0039 Boechera stricta Bostr.10058s0039 I 0.900
Lus10001648.g Linum usitatissimum Lus10001648.g I 0.900
Lus10021659.g Linum usitatissimum Lus10021659.g I 0.900
NAC92 Arabidopsis thaliana AT5G39610 D 0.900
ATNAC2 Arabidopsis lyrata fgenesh2_kg.7__3461__AT5G39610.1 I 0.900
Cucsa.338700 Cucumis sativus Cucsa.338700 I 0.900
Bo7g098620 Brassica oleracea Bo7g098620 I 0.899
ANAC100 Arabidopsis lyrata fgenesh2_kg.8__2118__AT5G61430.1 D 0.899
Cagra.0542s0037 Capsella grandiflora Cagra.0542s0037 I 0.899
MDP0000121265 Malus domestica MDP0000121265 I 0.899
Carubv10026752m.g Capsella rubella Carubv10026752m.g I 0.899
MDP0000232050 Malus domestica MDP0000232050 I 0.899
Bra012960 Brassica rapa Bra012960 I 0.899
MDP0000129335 Malus domestica MDP0000129335 I 0.899
Bra029313 Brassica rapa Bra029313 I 0.899
Bo6g062160 Brassica oleracea Bo6g062160 I 0.899
estExt_gwp_gw1.C_460173 Physcomitrella patens estExt_gwp_gw1.C_460173 I 0.898
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I 0.898
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I 0.898
Cla017258 Citrullus lanatus Cla017258 I 0.897
gene04424-v1.0-hybrid Fragaria vesca gene04424-v1.0-hybrid I 0.897
Cucsa.032500 Cucumis sativus Cucsa.032500 I 0.897
BRADI4G34157 Brachypodium distachyon BRADI4G34157 I 0.897
Bostr.26833s0095 Boechera stricta Bostr.26833s0095 I 0.896
Eucgr.I01958 Eucalyptus grandis Eucgr.I01958 I 0.896
ATNAC3 Arabidopsis lyrata fgenesh2_kg.5__665__AT3G29035.1 I 0.896
Thhalv10027874m.g Eutrema salsugineum Thhalv10027874m.g I 0.896
Bra028435 Brassica rapa Bra028435 I 0.896
Gorai.007G038100 Gossypium raimondii Gorai.007G038100 I 0.896
Carubv10017737m.g Capsella rubella Carubv10017737m.g I 0.895
Carubv10005201m.g Capsella rubella Carubv10005201m.g I 0.895
Bra028685 Brassica rapa Bra028685 I 0.895
Ciclev10020480m.g Citrus clementina Ciclev10020480m.g I 0.895
orange1.1g017827m.g Citrus sinensis orange1.1g017827m.g I 0.895
GSMUA_Achr6G01770_001 Musa acuminata GSMUA_Achr6G01770_001 I 0.894
28649.m000212 Ricinus communis 28649.m000212 I 0.894
SapurV1A.0377s0130 Salix purpurea SapurV1A.0377s0130 I 0.893
cassava1758.valid.m1 Manihot esculenta cassava1758.valid.m1 I 0.893
POPTR_0012s01610 Populus trichocarpa POPTR_0012s01610 I 0.893
cassava361.valid.m1 Manihot esculenta cassava361.valid.m1 I 0.892
30138.m004055 Ricinus communis 30138.m004055 I 0.892
Bo2g161570 Brassica oleracea Bo2g161570 I 0.892
Cla004358 Citrullus lanatus Cla004358 I 0.892
cassava17517.valid.m1 Manihot esculenta cassava17517.valid.m1 I 0.892
Cla019391 Citrullus lanatus Cla019391 I 0.891
GLYMA09G37050 Glycine max GLYMA09G37050 I 0.890
Cucsa.197830 Cucumis sativus Cucsa.197830 I 0.889
Thhalv10004583m.g Eutrema salsugineum Thhalv10004583m.g I 0.889
cassava1757.valid.m1 Manihot esculenta cassava1757.valid.m1 I 0.889
Traes_5BL_657BF1497 Triticum aestivum Traes_5BL_657BF1497 I 0.888
PRUPE_ppa005770mg Prunus persica PRUPE_ppa005770mg I 0.887
Cagra.6981s0001 Capsella grandiflora Cagra.6981s0001 I 0.887
Bo2g008760 Brassica oleracea Bo2g008760 I 0.887
Bra003023 Brassica rapa Bra003023 I 0.887
Bra036223 Brassica rapa Bra036223 I 0.886
Bo9g008770 Brassica oleracea Bo9g008770 I 0.885
GSMUA_Achr10G26180_001 Musa acuminata GSMUA_Achr10G26180_001 I 0.885
GLYMA18G49620 Glycine max GLYMA18G49620 I 0.885
Cla010484 Citrullus lanatus Cla010484 I 0.885
cassava41252.m1 Manihot esculenta cassava41252.m1 I 0.884
POPTR_0015s02170 Populus trichocarpa POPTR_0015s02170 I 0.883
Pavir.J00978 Panicum virgatum Pavir.J00978 I 0.883
GRMZM2G393433 Zea mays GRMZM2G393433 I 0.883
Si007886m.g Setaria italica Si007886m.g I 0.883
Sb08g006330 Sorghum bicolor Sb08g006330 I 0.883
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I 0.882
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I 0.882
PDK_20s1371231g001 Phoenix dactylifera PDK_20s1371231g001 I 0.882
Pm025307 Prunus mume Pm025307 I 0.882
Eucgr.C02105 Eucalyptus grandis Eucgr.C02105 I 0.882
PGSC0003DMG400019523 Solanum tuberosum PGSC0003DMG400019523 I 0.882
Bo9g175670 Brassica oleracea Bo9g175670 I 0.882
e_gw1.288.15.1 Physcomitrella patens e_gw1.288.15.1 D 0.881
GSMUA_Achr8G24680_001 Musa acuminata GSMUA_Achr8G24680_001 I 0.881
SELMODRAFT_71303 Selaginella moellendorffii SELMODRAFT_71303 I 0.881
SELMODRAFT_67245 Selaginella moellendorffii SELMODRAFT_67245 I 0.881
SapurV1A.1285s0100 Salix purpurea SapurV1A.1285s0100 I 0.880
POPTR_0018s03910 Populus trichocarpa POPTR_0018s03910 I 0.880
GLYMA14G20276 Glycine max GLYMA14G20276 I 0.880
POPTR_0006s29180 Populus trichocarpa POPTR_0006s29180 I 0.880
SapurV1A.0263s0310 Salix purpurea SapurV1A.0263s0310 I 0.880
SapurV1A.1363s0020 Salix purpurea SapurV1A.1363s0020 I 0.880
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.880
Ca_22370 Cicer arietinum Ca_22370 I 0.879
GLYMA06G08440 Glycine max GLYMA06G08440 I 0.879
MTR_3g109340 Medicago truncatula MTR_3g109340 I 0.878
GLYMA13G05540 Glycine max GLYMA13G05540 I 0.878
Solyc03g115850.2 Solanum lycopersicum Solyc03g115850.2 I 0.878
GLYMA04G08320 Glycine max GLYMA04G08320 I 0.878
Lus10026966.g Linum usitatissimum Lus10026966.g I 0.877
Lus10030723.g Linum usitatissimum Lus10030723.g I 0.877
mgf018675m Mimulus guttatus mgf018675m I 0.877
Bra025374 Brassica rapa Bra025374 I 0.877
Bo7g087220 Brassica oleracea Bo7g087220 I 0.876
PGSC0003DMG400033047 Solanum tuberosum PGSC0003DMG400033047 I 0.876
Solyc06g069710.2 Solanum lycopersicum Solyc06g069710.2 I 0.876
e_gw1.227.43.1 Physcomitrella patens e_gw1.227.43.1 I 0.875
Lus10020165.g Linum usitatissimum Lus10020165.g I 0.874
chr1.LjT35C22.60.nc Lotus japonicus chr1.LjT35C22.60.nc I 0.874
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I 0.873
Ciclev10020549m.g Citrus clementina Ciclev10020549m.g I 0.872
Cucsa.158180 Cucumis sativus Cucsa.158180 I 0.872
GSMUA_Achr7G19680_001 Musa acuminata GSMUA_Achr7G19680_001 I 0.872
orange1.1g016542m.g Citrus sinensis orange1.1g016542m.g I 0.872