CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NAC062
(
Arabidopsis thaliana
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
AT3G49530
T292077_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Transcription factor that serves as a molecular link between cold signals and pathogen resistance responses. Undergoes proteolytic processing triggered by cold-induced changes in membrane fluidity.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC062
M00977_2.00
Arabidopsis thaliana
NTTMCTTAV
BTAAGKAAN
PBM
Lindemose et al.(2014)
NTL6
(Direct)
(Direct)
NAC062
M07212_2.00
Arabidopsis thaliana
CTTMNHNNBYAAGNWWHN
NDWWNCTTRVNNDNKAAG
Dap-seq
OMalley et al.(2016)
ANAC062_colamp_a
(Direct)
(Direct)
NAC062
M07213_2.00
Arabidopsis thaliana
TNCTTMDBNNBYAAG
CTTRVNNVHKAAGNA
Dap-seq
OMalley et al.(2016)
ANAC062_col
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.870
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00977_2.00
NAC/NAM
14
141
PVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREIDICKWEPWDLPDFSVIKTKDSEWLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKIKSGKTNIIGVKRTLVFHAGRAPRGTRTNWIIHEYRA
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G49530.1
NAC/NAM
14
141
PVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREIDICKWEPWDLPDFSVIKTKDSEWLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKIKSGKTNIIGVKRTLVFHAGRAPRGTRTNWIIHEYRA
AT3G49530.2
NAC/NAM
14
141
PVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREIDICKWEPWDLPDFSVIKTKDSEWLYFCPLDRKYPSGSRQNRATVAGYWKATGKDRKIKSGKTNIIGVKRTLVFHAGRAPRGTRTNWIIHEYRA
Links
Other
NAC/NAM
family TFs
Other
Arabidopsis thaliana
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy