CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRN2
(
Arabidopsis thaliana
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
AT4G10350
T292086_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BRN2
M07217_2.00
Arabidopsis thaliana
CKTVHDNNNYAMGYWA
TWRCKTRNNNHDBAMG
Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a
(Direct)
(Direct)
BRN2
M07218_2.00
Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH
DDTWRCKTRHDNHDBAMGHWA
Dap-seq
OMalley et al.(2016)
ANAC070_col
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.922
0.825
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.922
0.825
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN
NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.912
0.798
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.902
0.807
OS06G0131700
M02378_2.00
Oryza sativa
NNNNHMDNND
HNNHKDNNNN
PBM
Weirauch et al.(2014)
pTH8356
0.873
0.798
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G10350.1
NAC/NAM
10
137
PPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRL
AT4G10350.2
NAC/NAM
2
90
LSFYFLEERCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Arabidopsis thaliana
TFs
247 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O5_05211
Cladophialophora psammophila
A1O5_05211
N
0.000
A1O9_07021
Exophiala aquamarina
A1O9_07021
N
0.000
ACRE_069230
Acremonium chrysogenum
ACRE_069230
N
0.000
BBA_07453
Beauveria bassiana
BBA_07453
N
0.000
BBA_08510
Beauveria bassiana
BBA_08510
N
0.000
CCM_04496
Cordyceps militaris
CCM_04496
N
0.000
FFUJ_11519
Fusarium fujikuroi
FFUJ_11519
N
0.000
FOXG_02565
Fusarium oxysporum
FOXG_02565
N
0.000
HMPREF1541_00544
Cyphellophora europaea
HMPREF1541_00544
N
0.000
M437DRAFT_47167
Aureobasidium melanogenum
M437DRAFT_47167
N
0.000
MBM_08217
Marssonina brunnea
MBM_08217
N
0.000
OIDMADRAFT_97438
Oidiodendron maius
OIDMADRAFT_97438
N
0.000
PODANS_3_4320
Podospora anserina
PODANS_3_4320
N
0.000
PV08_06958
Exophiala spinifera
PV08_06958
N
0.000
S40285_05664
Stachybotrys chlorohalonata
S40285_05664
N
0.000
S40288_04224
Stachybotrys chartarum
S40288_04224
N
0.000
SBOR_5781
Sclerotinia borealis
SBOR_5781
N
0.000
SBOR_6218
Sclerotinia borealis
SBOR_6218
N
0.000
W97_07560
Coniosporium apollinis
W97_07560
N
0.000
Z517_00801
Fonsecaea pedrosoi
Z517_00801
N
0.000