CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
BRN2
(
Arabidopsis thaliana
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
AT4G10350
T292086_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BRN2
M07217_2.00
Arabidopsis thaliana
CKTVHDNNNYAMGYWA
TWRCKTRNNNHDBAMG
Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a
(Direct)
(Direct)
BRN2
M07218_2.00
Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH
DDTWRCKTRHDNHDBAMGHWA
Dap-seq
OMalley et al.(2016)
ANAC070_col
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.922
0.825
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.922
0.825
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN
NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.912
0.798
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.902
0.807
OS06G0131700
M02378_2.00
Oryza sativa
NNNNHMDNND
HNNHKDNNNN
PBM
Weirauch et al.(2014)
pTH8356
0.873
0.798
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G10350.1
NAC/NAM
10
137
PPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRL
AT4G10350.2
NAC/NAM
2
90
LSFYFLEERCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Arabidopsis thaliana
TFs
247 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy