anac071 (Arabidopsis thaliana)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 AT4G17980 T292087_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
anac071
M07219_2.00		 Arabidopsis thaliana
CTTSHNNYHCAMGYW
WRCKTGDRNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC071_col_a		 (Direct) (Direct)
anac071
M07220_2.00		 Arabidopsis thaliana
CTTSHNNNNSAMGYA
TRCKTSNNNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC071_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
anac096
M07237_2.00 		Arabidopsis thaliana
CTTSHNNNNBAMGHAAYC
GRTTDCKTVNNNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC096_colamp_a 		0.928 0.826
anac096
M07238_2.00 		Arabidopsis thaliana
TTNCTTSWNNHNYAMG
CKTRNDNNWSAAGNAA		 Dap-seq
OMalley et al.(2016)
ANAC096_col 		0.928 0.826
anac028
M01289_2.00 		Arabidopsis thaliana
NTTGCGTRH
DYACGCAAN		 PBM
Lambert et al.(2019)
pTH9962 		0.876 0.734
anac028
M07179_2.00 		Arabidopsis thaliana
CTTSHNNHDCAMGYWA
TWRCKTGHDNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC028_col_a 		0.876 0.734
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G17980.1 NAC/NAM 7 135
AT4G17980.2 NAC/NAM 7 135

Links

Other NAC/NAM family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action